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2
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|
alpha2,6-Sialoglycan-regulated antitumor immunity of tumor-infiltrating CD8(+) T cells.
(nature.com)
|
Liang S
…
Chen X
Nature Chemical Biology
2026-09-01
|
#immunotherapy
#glycosylation
#t-cells
#cancer
#transcriptomics
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4
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A single-cell atlas of multiple myeloma defines malignant archetypes and proliferative states.
(nature.com)
|
Zada M
…
Amit I
Nature Genetics
2026-09-01
|
#myeloma
#transcriptomics
#single-cell
#heterogeneity
#immunotherapy
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1
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Multi-organ single-cell transcriptomic atlas identifies QrIAA14 as a candidate negative regulator of adventitious root development in Quercus robur.
(journals.plos.org)
|
Hui W
…
He F
PLOS Genetics
2026-09-01
|
#transcriptomics
#single-cell
#plants
#auxin
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2
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An NFATC4 phospho-switch links matrix stiffness to fibroblast fate.
(jci.org)
|
Frabotta RS
…
Tata PR
Journal of Clinical Investigation
2026-09-01
|
#fibrosis
#phosphoproteomics
#mechanotransduction
#myofibroblast
#transcriptomics
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1
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The SigD regulon of Mycobacterium abscessus determines cell envelope composition and antibiotic susceptibility.
(journals.plos.org)
|
Jones SR
…
Ghosh P
PLOS Genetics
2026-09-01
|
#transcriptomics
#antibiotic-resistance
#cell envelope
#mycobacterium
#gene regulation
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1
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Transcriptomic shift in ethanol and amino acid metabolic genes regulated by Med15 during alcoholic fermentation.
(microbiologyresearch.org)
|
Cooper DG
…
Fassler JS
Microbial Genomics
2026-09-01
|
#transcriptomics
#fermentation
#metabolism
#yeast
#stress response
|
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1
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|
The carbohydrate utilization regulator Cbr1 coordinates nutrient-specific gene activation with selective carbon catabolite repression in a basidiomycete yeast.
(journals.plos.org)
|
Reyes-Chavez B
…
Huberman LB
PLOS Biology
2026-09-01
|
#catabolism
#yeast
#transcriptomics
#nutrient sensing
#transcription-factors
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1
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Triacylglycerol metabolism is a novel target to combat West Nile virus infection.
(tandfonline.com)
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Caridi F
…
Martin-Acebes MA
Emerging Microbes & Infections
2026-09-01
|
#flavivirus
#lipidome
#antiviral
#encephalitis
#transcriptomics
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1
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A Token-Pruning Framework Enables Efficient Representation of the Human Genome for RNA Modification Analysis.
(academic.oup.com)
|
Gao W
…
Wei L
Bioinformatics
2026-09-01
|
#transcriptomics
#rna
#deep learning
#sequence modeling
#epigenetics
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2
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|
Rbp-Jkappa controls NK cell late maturation and migration via chromatin landscape remodeling.
(pnas.org)
|
Peng H
…
Deng Y
PNAS
2026-09-01
|
#immunity
#transcriptomics
#chromatin
#differentiation
#signaling
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2
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|
AML1-ETO hijacks a distal enhancer of NAT10 to reprogram glutathione metabolism and sustain leukemia stem cell stemness.
(pnas.org)
|
Li S
…
Zhou J
PNAS
2026-09-01
|
#leukemia
#epigenetics
#metabolism
#transcriptomics
#stemness
|
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1
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The 100 Diatom Genomes Project.
(journals.plos.org)
|
Mock T
…
Grigoriev IV
PLOS Biology
2026-09-01
|
#genomics
#transcriptomics
#biodiversity
#evolution
|
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1
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Post-transcriptional regulation of Profilin-2 by microRNAs and RNA-binding proteins forms a critical regulatory node for early embryonic cell fate decisions.
(journals.plos.org)
|
Sangokoya C
…
Blelloch R
PLOS Genetics
2026-09-01
|
#transcriptomics
#differentiation
#micrornas
#embryogenesis
#pluripotency
|
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2
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|
Actin depolymerization factor (ADF) moonlighting: Nuclear immune regulation by interacting with WRKY transcription factors and shaping the transcriptome.
(pnas.org)
|
Li P
…
Day B
PNAS
2026-09-01
|
#transcriptomics
#immunity
#transcription
#plant-pathogen
|
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2
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|
Elevated CO(2) reinforces PT11-dependent symbiotic phosphate uptake to reprogram root nutrient acquisition in rice.
(pnas.org)
|
Chiu CH
…
Paszkowski U
PNAS
2026-09-01
|
#symbiosis
#phosphate
#mycorrhizal
#transcriptomics
#nutrient-uptake
|
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2
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|
Mechanosensitive phosphorylation of NFATC4 at S213/S217 drives fibroblast-to-myofibroblast transition and fibrosis.
(jci.org)
|
Kadri S
…
Schiller HB
Journal of Clinical Investigation
2026-09-01
|
#fibrosis
#mechanotransduction
#phosphoproteomics
#myofibroblast
#transcriptomics
|
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0
|
|
Concerted changes in the pediatric single-cell intestinal ecosystem before and after anti-TNF blockade.
(elifesciences.org)
|
Zheng HB
…
Kean LS
eLife
2026-09-01
|
#transcriptomics
#crohn's disease
#single-cell
#inflammation
#immunology
|
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1
|
|
Long-read sequencing reveals widespread novel splicing and neojunction-derived neoantigens in nasopharyngeal carcinoma.
(genome.cshlp.org)
|
Shuai Y
…
Wang X
Genome Research
2026-09-01
|
#transcriptomics
#cancer
#splicing
#neoantigens
#sequencing
|
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1
|
|
OsDUF1223 negatively regulates seedling drought tolerance and modulates nitrate-dependent root growth in rice.
(journals.plos.org)
|
Zhao X
…
Li L
PLOS Genetics
2026-09-01
|
#drought
#stress
#signaling
#tolerance
#transcriptomics
|
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2
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|
An integrated landscape of mRNA and protein isoforms.
(linkinghub.elsevier.com)
|
Kedan A
…
Selbach M
Cell Reports
2026-09-01
|
#isoforms
#proteomics
#transcriptomics
#proteogenomics
#splicing
|
|
2
|
|
Interpretable deep neural network identifies robust biomarkers for diseases with mechanistic insights from omics data.
(academic.oup.com)
|
Hu X
…
Jiang H
Briefings in Bioinformatics
2026-09-01
|
#biomarker
#deep learning
#transcriptomics
#interpretability
#microbiome
|
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1
|
|
Altered Peripheral and Synovial CD8(+) T Cell Signatures Are Associated With Disease Activity in Female Early-Stage Rheumatoid Arthritis.
(onlinelibrary.wiley.com)
|
Xu L
…
Liu Y
European Journal of Immunology
2026-09-01
|
#rheumatoid arthritis
#immunology
#sex-differences
#transcriptomics
#autoimmunity
|
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2
|
|
Dynamic multimodal survival prediction in multiple myeloma integrating gene expression, longitudinal laboratory measurements, and treatment history.
(academic.oup.com)
|
Jia S
…
Tsunoda T
Briefings in Bioinformatics
2026-09-01
|
#prognosis
#myeloma
#survival
#transcriptomics
#deeplearning
|
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1
|
|
Carotid body dysfunction contributes to respiratory instability in Rett syndrome.
(linkinghub.elsevier.com)
|
Strain ML
…
Mulkey DK
Current Biology
2026-09-01
|
#rett syndrome
#respiratory
#chemoreceptors
#neurodevelopmental
#transcriptomics
|
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1
|
|
Characterization of METTL3/14-mediated m6A modification in human transcriptome using Nanopore direct RNA sequencing.
(journals.plos.org)
|
Kurtyan E
…
Ibrahim F
PLOS Genetics
2026-09-01
|
#transcriptomics
#sequencing
#epigenomics
#methylation
#modifications
|
|
7
|
|
Tumor immune microenvironment remodeling predicts response to checkpoint inhibitor therapy.
(linkinghub.elsevier.com)
|
Lin Z
…
Aran D
Cancer Cell
2026-09-01
|
#immunotherapy
#cancer
#transcriptomics
#microenvironment
#immunology
|
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1
|
|
Outbreaks of fluconazole-resistant Candida parapsilosis are driven by low-biofilm-producing isolates that emerge under host selection.
(journals.plos.org)
|
Daneshnia F
…
Arastehfar A
PLOS Biology
2026-09-01
|
#antifungal resistance
#biofilm
#candida
#transcriptomics
#virulence
|
|
8
|
|
Cross-species single-cell atlas of the striatum defines cell-type and subregion disease vulnerabilities.
(linkinghub.elsevier.com)
|
Linville RM
…
Heiman M
Cell
2026-09-01
|
#transcriptomics
#striatum
#single-cell
#neurodegeneration
#huntington's
|
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2
|
|
Cepheid 9-gene host mRNA expression across the spectrum of Mycobacterium tuberculosis infection and disease: insights across the lifespan.
(linkinghub.elsevier.com)
|
Seifert M
…
Rodwell TC
EBioMedicine
2026-09-01
|
#tb
#transcriptomics
#diagnostics
#immunity
#biomarker
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1
|
|
Influenza A virus co-infection alters Streptococcus pneumoniae gene expression during upper respiratory tract colonization.
(journals.asm.org)
|
Nutter NA
…
Zafar MA
Infection and Immunity
2026-09-01
|
#transcriptomics
#co-infection
#colonization
#virulence
|
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1
|
|
Isoform-Level Analysis Reveals Reproducible Early Changes in Transcript Usage During Human Vaccine Responses.
(onlinelibrary.wiley.com)
|
Riemann L
…
Forster R
European Journal of Immunology
2026-09-01
|
#transcriptomics
#vaccination
#isoforms
#immunology
#rna-seq
|
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2
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|
Decoding cell-cell communication in spatial transcriptomics: mechanistic insights, modeling constraints, and analytical caveats.
(academic.oup.com)
|
Wu Y
…
Cui Y
Briefings in Bioinformatics
2026-09-01
|
#transcriptomics
#cell-communication
#spatial analysis
#signaling
#methodology
|
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1
|
|
Dynamic and distinct physiological responses by a soil bacterium promote survival along a desiccation continuum.
(journals.asm.org)
|
Kwiecinski JV
…
Newman DK
mBio
2026-09-01
|
#desiccation
#osmolytes
#stress response
#soil-bacteria
#transcriptomics
|
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2
|
|
CRISPRa-identified transcription factors reprogram glioblastoma into dendritic cell-like cells to elicit systemic antitumor immunity.
(linkinghub.elsevier.com)
|
Liu X
…
Gu J
Cell Reports Medicine
2026-09-01
|
#immunotherapy
#glioblastoma
#crispr
#reprogramming
#transcriptomics
|
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2
|
|
scDiagnostics: systematic assessment of cell type annotation in single-cell transcriptomics data.
(academic.oup.com)
|
Christidis A
…
Geistlinger L
Briefings in Bioinformatics
2026-09-01
|
#transcriptomics
#annotation
#single-cell
#quality control
|
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8
|
|
Live-cell transcriptomics with engineered virus-like particles.
(linkinghub.elsevier.com)
|
Najia MA
…
Blainey PC
Cell
2026-09-01
|
#transcriptomics
#live-cell
#gene expression
#stem-cells
#differentiation
|
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1
|
|
Temperature during conidiophore development primes Aspergillus fumigatus spore transcriptome for asexual or sexual reproduction.
(journals.asm.org)
|
Stanislaw JM
…
Momany M
mBio
2026-09-01
|
#transcriptomics
#sporulation
#aspergillus
#thermotolerance
#infection
|
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2
|
|
Amplification bias in sequencing-based spatial transcriptomics: sources, mechanisms, impacts, and mitigation strategies.
(academic.oup.com)
|
Shan Y
…
Ge Q
Briefings in Bioinformatics
2026-09-01
|
#transcriptomics
#bias
#sequencing
#amplification
|
|
2
|
|
Gene-Chronos: parameter-efficient developmental time inference using a pretrained single-cell foundation model.
(academic.oup.com)
|
Liu Y
…
Tian T
Briefings in Bioinformatics
2026-09-01
|
#transcriptomics
#single-cell
#temporal
#foundation-models
|
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4
|
|
Mechanisms and functional implications of long-range enhancer-dependent gene regulation.
(nature.com)
|
Iliadou M
…
Rada-Iglesias A
Nature Genetics
2026-09-01
|
#enhancer
#gene regulation
#transcriptomics
|