|
0
|
|
Integrative agent-based modeling of cutaneous lupus: single-cell benchmarking and in silico evaluation of B-cell therapies.
(academic.oup.com)
|
Wahab A
…
Pappalardo F
Briefings in Bioinformatics
2026-07-03
|
#lupus
#immunology
#modeling
#autoimmunity
#single-cell
|
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0
|
|
Exploring cell-type associations of rare disease phenotypes using non-diseased cell atlases.
(academic.oup.com)
|
Novoa J
…
Chagoyen M
Briefings in Bioinformatics
2026-07-03
|
#transcriptomics
#single-cell
#rare disease
#phenotype
#cell-atlas
|
|
0
|
|
TopoMetry systematically learns and evaluates the latent geometry of single-cell data.
(elifesciences.org)
|
Sidarta-Oliveira D
…
Velloso LA
eLife
2026-07-03
|
#transcriptomics
#single-cell
#clustering
#visualization
|
|
0
|
|
scGenoByte: a GenoByte embedding transformer with biological priors for cell type annotation.
(academic.oup.com)
|
Yao J
…
Wu S
Briefings in Bioinformatics
2026-07-03
|
#transcriptomics
#single-cell
#cell annotation
#representation learning
#pathway analysis
|
|
0
|
|
The Lomb-Scargle periodogram-based differentially expressed gene detection along pseudotime.
(academic.oup.com)
|
Iuchi H
…
Hamada M
Nucleic Acids Research
2026-07-03
|
#transcriptomics
#single-cell
#trajectory
#differentiation
|
|
0
|
|
scDifformer: diffusion-based post-training for virtual cell modeling across large-scale single-cell data.
(academic.oup.com)
|
Xiao Z
…
Guo L
Nucleic Acids Research
2026-07-03
|
#transcriptomics
#single-cell
#annotation
#diffusion models
#denoising
|
|
0
|
|
A systematic benchmarking framework and dual-view optimization strategy for single-cell DNA methylation imputation.
(academic.oup.com)
|
Liang H
…
Chen S
Briefings in Bioinformatics
2026-07-03
|
#methylation
#single-cell
#imputation
#epigenetics
#benchmarking
|
|
0
|
|
AGCLD: an adaptive graph contrastive learning method with denoising for spatial domain identification.
(academic.oup.com)
|
Li Y
…
Long H
Briefings in Bioinformatics
2026-07-03
|
#spatial-transcriptomics
#single-cell
#active learning
#multi-omics
#denoising
|
|
0
|
|
Decoding apoptosis, ferroptosis, and inflammatory cell death in adenomyosis at single-cell resolution.
(academic.oup.com)
|
Sheng Q
…
He X
Briefings in Bioinformatics
2026-07-03
|
#single-cell
#transcriptomics
#apoptosis
#adenomyosis
#ferroptosis
|
|
0
|
|
scImmuneCo: a compendium of cell-type-specific functional modules for decoding immune responses from single-cell RNA-seq data.
(academic.oup.com)
|
Wang FQ
…
Yang W
Briefings in Bioinformatics
2026-07-03
|
#transcriptomics
#immunity
#single-cell
#co-expression
#interferon
|
|
0
|
|
Addressing multiple facets of ligand-receptor network inference including single-cell proteomics.
(academic.oup.com)
|
Villemin JP
…
Colinge J
Nucleic Acids Research
2026-07-03
|
#proteomics
#transcriptomics
#single-cell
#bioinformatics
|
|
0
|
|
RAG: a regularized adaptive graph-based method for rare-cell identification from single-cell expression data.
(academic.oup.com)
|
Wang X
…
Feng S
Briefings in Bioinformatics
2026-07-03
|
#single-cell
#transcriptomics
#clustering
#cell identification
#graph-based
|
|
0
|
|
UDEC-MO: an uncertainty-guided deep embedded clustering framework for bulk and single-cell multi-omics data.
(academic.oup.com)
|
Li J
…
Tang J
Briefings in Bioinformatics
2026-07-03
|
#multi-omics
#clustering
#single-cell
#deep learning
#cancer
|
|
0
|
|
Graph-based contrastive learning enables unified integration and niche transfer across single-cell and spatial multi-omics.
(academic.oup.com)
|
Zhou W
…
Tian L
Briefings in Bioinformatics
2026-07-03
|
#transcriptomics
#single-cell
#embedding
#proteomics
|
|
0
|
|
PLNFGL: Joint Estimation of Multi-Condition Gene Networks from Single-cell RNA-seq Data.
(academic.oup.com)
|
Zhai W
…
Ji J
Bioinformatics
2026-07-03
|
#transcriptomics
#single-cell
#networks
#neurodegeneration
#cancer
|
|
0
|
|
Screening of cell-type-specific meta-programs for drug repurposing in Alzheimer's disease.
(academic.oup.com)
|
Zhang C
…
Zhang Y
Briefings in Bioinformatics
2026-07-03
|
#transcriptomics
#neurodegeneration
#neuroinflammation
#drug-repurposing
#single-cell
|