|
0
|
|
R4ST: a reference-guided graph-generative model for robust reconstruction of spatial transcriptomic profiles.
(academic.oup.com)
|
Wei M
…
Liu ZP
Bioinformatics
2026-07-01
|
#transcriptomics
#imputation
#graph
#reconstruction
|
|
0
|
|
A dependency-aware deep generative model for inferring RNA velocity from spatial transcriptomics.
(academic.oup.com)
|
Chen S
…
Tian T
Bioinformatics
2026-07-01
|
#transcriptomics
#generative
#dynamics
|
|
0
|
|
SIVA: diagonal integration of spatial multi-omics data via spatially informed variational autoencoders and anchor guidance.
(academic.oup.com)
|
Jiang P
…
Tian T
Bioinformatics
2026-07-01
|
#spatial omics
#integration
#machine learning
#multimodal
#transcriptomics
|
|
0
|
|
Benchmarking AI scientists for omics data-driven biological discovery.
(academic.oup.com)
|
Luo E
…
Zhang X
Bioinformatics
2026-07-01
|
#transcriptomics
#ai
#benchmark
#single-cell
#annotation
|
|
0
|
|
Diffusion-based representation integration for foundation models improves spatial transcriptomics analysis.
(academic.oup.com)
|
Jain A
…
Singh R
Bioinformatics
2026-07-01
|
#transcriptomics
#clustering
#embedding
#annotation
|
|
0
|
|
DNA-aware evaluation and debiasing of sequence-to-function models.
(academic.oup.com)
|
Cakmakci D
…
Li Y
Bioinformatics
2026-07-01
|
#machine learning
#sequencing
#epigenomics
#transcriptomics
#regulatory-genomics
|
|
0
|
|
Fairness-aware supervised hierarchical contrastive semantic learning for sexual dimorphism analysis.
(academic.oup.com)
|
Ko E
…
Kang M
Bioinformatics
2026-07-01
|
#transcriptomics
#sexual dimorphism
#precision medicine
#machine learning
#cancer
|
|
0
|
|
DiSPA: differential substructure-pathway attention for drug response prediction.
(academic.oup.com)
|
Han Y
…
Lim S
Bioinformatics
2026-07-01
|
#pharmacogenomics
#drug response
#deep learning
#transcriptomics
#pathways
|
|
0
|
|
PertAdapt: unlocking single-cell foundation models for genetic perturbation prediction via condition-sensitive adaptation.
(academic.oup.com)
|
Bai D
…
Xing EP
Bioinformatics
2026-07-01
|
#transcriptomics
#perturbation
#single-cell
#knockouts
#machine learning
|
|
0
|
|
A disentangled transformer-based transfer learning framework to predict patient drug response from tumor single-cell transcriptomics.
(academic.oup.com)
|
Sun X
…
Li M
Bioinformatics
2026-07-01
|
#transcriptomics
#drug response
#transfer learning
#cancer
#heterogeneity
|
|
0
|
|
Bridging the phenotype-target gap for molecular generation via multi-objective reinforcement learning.
(academic.oup.com)
|
Guo H
…
Liu H
Bioinformatics
2026-07-01
|
#drug design
#molecular_generation
#reinforcement learning
#transcriptomics
#cancer
|
|
0
|
|
Amaranth: enhanced single-cell transcript assembly via discriminative modelling of UMI reads and internal reads.
(academic.oup.com)
|
Zang XC
…
Shao M
Bioinformatics
2026-07-01
|
#transcriptomics
#assembly
#single-cell
#isoforms
#sequencing
|
|
0
|
|
Striping artifact removal in VisiumHD data through nuclear counts modeling.
(academic.oup.com)
|
Malsot P
…
Ratsch G
Bioinformatics
2026-07-01
|
#transcriptomics
#artifact-correction
#spatial analysis
#normalization
|
|
0
|
|
CPS: mapping physical coordinates to high-fidelity spatial transcriptomics via privileged multi-scale context distillation.
(academic.oup.com)
|
Zhang L
…
Wan L
Bioinformatics
2026-07-01
|
#transcriptomics
#denoising
#tissue
#imputation
|
|
0
|
|
Knowledge-guided contextual gene set analysis with large language models.
(academic.oup.com)
|
Wang Z
…
Lu Z
Bioinformatics
2026-07-01
|
#pathway analysis
#transcriptomics
#machine learning
#oncology
|
|
0
|
|
A systems-level atlas of carbon-response transcriptional states in Escherichia coli.
(pnas.org)
|
Shin J
…
Palsson BO
PNAS
2026-07-01
|
#transcriptomics
#metabolism
#gene regulation
#systems biology
|
|
0
|
|
A transcription factor modulates dermal architecture to generate structural and pigment color diversity in lizards.
(pnas.org)
|
Aguilar P
…
Carneiro M
PNAS
2026-07-01
|
#pigmentation
#coloration
#evolution
#genetics
#transcriptomics
|
|
0
|
|
Endozoicomonas acroporae enhances coral thermal resilience through host-microbe coordination.
(academic.oup.com)
|
Lu CY
…
Tang SL
The ISME Journal
2026-07-01
|
#probiotic
#microbiome
#transcriptomics
#symbiosis
#thermal stress
|
|
0
|
|
Coordination of N(2)-fixing cell specialization and patterning in filamentous cyanobacteria by a uniquely structured sigma factor.
(pnas.org)
|
Hu X
…
Xu X
PNAS
2026-07-01
|
#differentiation
#cyanobacteria
#transcriptomics
#patterning
#regulation
|
|
0
|
|
Connecting single-cell transcriptomes to projectomes in the mouse visual cortex.
(nature.com)
|
Sorensen SA
…
Zeng H
Nature
2026-07-01
|
#transcriptomics
#single-cell
#neuronal
#morphology
#classification
|
|
0
|
|
Four-dimensional molecular mapping from a spatial snapshot reveals the dynamics of hair follicle organogenesis.
(linkinghub.elsevier.com)
|
Asami S
…
Kalhor R
Cell
2026-07-01
|
#transcriptomics
#organogenesis
#stem cell
|
|
0
|
|
LEF1 and niche factors determine T cell stemness across chronic diseases.
(linkinghub.elsevier.com)
|
Miakicheva S
…
Schietinger A
Cell
2026-07-01
|
#stemness
#t cell
#immunity
#autoimmunity
#transcriptomics
|
|
0
|
|
A genome-scale CRISPRi perturbation atlas of human induced pluripotent stem cells.
(nature.com)
|
Nourreddine S
…
Mali P
Nature Biotechnology
2026-07-01
|
#crispri
#pluripotency
#single-cell
#perturbation
#transcriptomics
|
|
0
|
|
Competing programs shape cortical sensorimotor-association axis development.
(nature.com)
|
Tsyporin J
…
Sestan N
Nature
2026-07-01
|
#neurodevelopment
#transcriptomics
#cortical-patterning
#axon-guidance
#developmental genetics
|
|
0
|
|
BulkFormer: A large-scale foundation model for bulk transcriptomes.
(linkinghub.elsevier.com)
|
Kang B
…
Cui Q
Cell Systems
2026-07-01
|
#transcriptomics
#language model
#rna-seq
#deep learning
|
|
0
|
|
Multi-Omics Reveal Extracellular Electron Transfer Mechanism Under Deep-Sea High Salinity.
(sfamjournals.onlinelibrary.wiley.com)
|
Chen H
…
Wu W
Environmental Microbiology
2026-07-01
|
#electrochemistry
#metabolism
#proteomics
#transcriptomics
#biogeochemistry
|
|
0
|
|
HNPP: Higher-order network-based personalized PageRank for detecting critical phase in complex biological systems.
(journals.plos.org)
|
Zhong J
…
Liu R
PLOS Computational Biology
2026-07-01
|
#transcriptomics
#single-cell
#networks
#criticality
#signaling
|
|
0
|
|
Inflammaging: Experimental Insights and Translational Advances.
(onlinelibrary.wiley.com)
|
Cossarizza A
European Journal of Immunology
2026-07-01
|
#inflammaging
#senescence
#aging
#inflammation
#transcriptomics
|
|
0
|
|
Comparative single-nucleus transcriptomics reveals asymmetric evolution of the Drosophila male and female germlines.
(journals.plos.org)
|
Hariyani IE
…
Ranz JM
PLOS Biology
2026-07-01
|
#transcriptomics
#germline
#evolution
#spermatogenesis
#oogenesis
|
|
0
|
|
Salinity and Phenol-Induced VBNC State of Quorum-Quenching Bacterium and Its Resuscitation Strategies for Biofilm Control in Industrial Wastewater Treatment.
(sfamjournals.onlinelibrary.wiley.com)
|
Su X
…
Sun F
Environmental Microbiology
2026-07-01
|
#vbnc
#quorum sensing
#biofilm
#wastewater
#transcriptomics
|
|
0
|
|
Photoperiodic patterns in miRNA-mRNA pairs and tRNA fragments revealed by time-course co-sequencing in Arabidopsis.
(journals.plos.org)
|
Leung CC
…
Gendron JM
PLOS Genetics
2026-07-01
|
#transcriptomics
#microrna
#sequencing
#photoperiodism
#plants
|
|
0
|
|
Methanol Metabolism in the Cytochrome and Menaquinone-Containing Acetogen Moorella thermoacetica.
(sfamjournals.onlinelibrary.wiley.com)
|
Rosenbaum FP
…
Muller V
Environmental Microbiology
2026-07-01
|
#acetogenesis
#transcriptomics
#bioenergetics
#metabolism
|
|
0
|
|
Integrating genomic and transcriptomic analyses reveals virulence factors and bloodstream infection mechanisms of Acinetobacter junii.
(microbiologyresearch.org)
|
Xiao C
…
Yang Z
Microbial Genomics
2026-07-01
|
#transcriptomics
#virulence
#sepsis
#amr
#pangenome
|