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0
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Integrated multi-omics strategies for identifying novel therapies in psoriasis.
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Si S
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Zhan S
Bioinformatics
2026-06-01
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Herbaria provide a valuable resource for obtaining informative mRNA.
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Tyszka AS
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Walker JF
Genome Research
2026-06-01
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#transcriptomics
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CeSpGRN: inferring cell-specific gene regulatory networks from single-cell multi-omics and spatial data.
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Zhang Z
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Zhang X
Bioinformatics
2026-06-01
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Latent endogenous giant viruses drive active infection and inheritance in a multicellular algal host.
(nature.com)
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Duchene C
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Coelho SM
Nature Microbiology
2026-06-01
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#endogenous viruses
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Dopamine drives persistent remodelling of the maternal brain.
(nature.com)
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O'Chan JC
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Maze I
Nature
2026-06-01
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#transcriptomics
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Hybrid untargeted short-read and targeted long-read RNA sequencing facilitates genotype-phenotype associations at single-cell resolution.
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Wang J
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Robinson MD
Genome Biology
2026-06-01
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Genomics-informed approach identifies which cell types regulate the metabolome.
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Krupkin H
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Montgomery SB
Bioinformatics
2026-06-01
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Tissue-specific mRNA m(6)A reprogramming unveils vitamin-driven post-transcriptional regulation in mice.
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Li J
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Wang X
Genome Research
2026-06-01
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LCR-modules: a collection of workflows for cancer genome analysis.
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Dreval K
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Morin RD
Bioinformatics
2026-06-01
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#sequencing
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FourierDrug: a domain generalization framework for robust drug response prediction via frequency-space asymmetric attention.
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Song R
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Liu H
Bioinformatics
2026-06-01
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#modeling
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Allele-specific splicing modulates protein isoforms and Alzheimer's disease risk.
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King AJ
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Xiao X
Genome Research
2026-06-01
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#splicing
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Transcription attenuation amplifies collateral vulnerabilities in rifampicin-resistant Mycobacterium tuberculosis.
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Eckartt KA
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Rock JM
Nature Microbiology
2026-06-01
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#amr
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Predicting gene-specific regulation with transcriptomic and epigenetic single-cell data.
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Rumpf L
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Schulz MH
Bioinformatics
2026-06-01
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Queen cell architecture shapes honey bee queen development.
(nature.com)
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Fang Y
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Wang K
Nature
2026-06-01
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Network methods for diagonal integration of unpaired single-cell multiomics data: a review.
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Barylli M
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Sheraton VM
Bioinformatics
2026-06-01
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Eosinophils drive intestinal remodelling and innate defence in reproduction.
(nature.com)
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Huang C
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Lim AI
Nature
2026-06-01
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#immunity
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Lipid accumulation in tuberculosis granulomas inhibits macrophage-CD4(+) T cell interactions and infection control.
(nature.com)
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Chai Q
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Liu CH
Nature Microbiology
2026-06-01
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Dynamics of intronic polyadenylation in the hematopoietic lineage and its regulation by DNA methylation.
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Rashmi R
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Singh I
Genome Research
2026-06-01
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Transposable element small RNAs and large RNAs in aging brains and implications in Huntington's and Parkinson's disease.
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Dayama G
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Lau NC
Genome Research
2026-06-01
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RECOMBINE identifies recurrent composite markers of cell types and states.
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Li X
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Korkut A
Genome Research
2026-06-01
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#transcriptomics
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Atlas-level single-cell integration and clustering-free differential expression analysis with GEDI 2.0.
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Mikaeili Namini A
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Najafabadi HS
Bioinformatics
2026-06-01
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CodonMoE: DNA language models for codon-dependent mRNA prediction.
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Du S
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Kingsford C
Bioinformatics
2026-06-01
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Mapping convergent regulators of melanoma drug resistance by PerturbFate.
(nature.com)
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Xu Z
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Cao J
Nature
2026-06-01
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#transcriptomics
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Integrative analyses elucidate transcriptional regulatory functions of risk alleles for metabolic liver disease.
(nature.com)
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Zhu B
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Hu W
Nature Genetics
2026-06-01
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#transcriptomics
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CytoSignal detects locations and dynamics of ligand-receptor signaling at cellular resolution from spatial transcriptomic data.
(nature.com)
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Liu J
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Welch JD
Nature Genetics
2026-06-01
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#transcriptomics
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Accurate, scalable and cross-platform cell identification for high-resolution spatial transcriptomics.
(nature.com)
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Sun D
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Wang C
Nature Genetics
2026-06-01
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#transcriptomics
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Combined single-cell profiling of chromatin-transcriptome and splicing across brain cell types, regions and disease state.
(nature.com)
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Hu W
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Tilgner HU
Nature Biotechnology
2026-06-01
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#transcriptomics
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Systema: a framework for evaluating genetic perturbation response prediction beyond systematic variation.
(nature.com)
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Vinas Torne R
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Brbic M
Nature Biotechnology
2026-06-01
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#transcriptomics
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Retrovirus insertions in host transcripts trigger de novo piRNA immunity.
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Rafanel B
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Senti KA
The EMBO Journal
2026-06-01
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#immunity
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Resolving sensitivity, specificity and signal contamination in Xenium spatial transcriptomics.
(nature.com)
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Bilous M
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Gottardo R
Nature Methods
2026-06-01
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Deep single-cell decoding of human pancreatic islets reveals T2D beta-cell gene expression defects.
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Bandesh K
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Stitzel ML
The EMBO Journal
2026-06-01
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#transcriptomics
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Generalist biological artificial intelligence in modeling the language of life.
(nature.com)
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Rao VM
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Rajpurkar P
Nature Biotechnology
2026-06-01
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#modeling
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Regulatory elements on chromatin-associated RNA 15 years beyond RNA epigenetics.
(nature.com)
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Dou X
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He C
Nature Chemical Biology
2026-06-01
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#epigenetics
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Unraveling lncRNA diversity at a single cell resolution and in a spatial context across different cancer types.
(nature.com)
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Prakrithi P
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Nguyen Q
Nature Methods
2026-06-01
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#transcriptomics
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Nuclear m(6)A modification regulates satellite transcription and chromosome segregation.
(nature.com)
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Huang C
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Liu J
Nature Chemical Biology
2026-06-01
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#methylation
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Spatially resolved single-cell analyses of human meningioma identify novel cell states influencing tumor microenvironment and progression.
(nature.com)
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Landry AP
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Zadeh G
Nature Genetics
2026-06-01
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#transcriptomics
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0
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FgJhd2 Modulates FgMpf2 Expression via H3K4 Demethylation and Influences Sexual Development in Fusarium graminearum.
(sfamjournals.onlinelibrary.wiley.com)
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Liao X
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Chen Y
Environmental Microbiology
2026-06-01
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#epigenetics
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0
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Identification of conserved RNA regulatory switches in living cells using RNA secondary structure ensemble mapping and covariation analysis.
(nature.com)
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Borovska I
…
Incarnato D
Nature Biotechnology
2026-06-01
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#transcriptomics
#rna secondary structure
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An encyclopedic regulatory and functional atlas of RNA interactomes.
(nature.com)
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Zhou K
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Yang J
Nature Methods
2026-06-01
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#transcriptomics
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Decoding sequence determinants of gene expression in diverse cellular and disease states.
(nature.com)
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Lal A
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Eraslan G
Nature Methods
2026-06-01
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#transcriptomics
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Cytosolic DNA inhibits rDNA transcription by retaining the RNA polymerase I transcription machinery.
(link.springer.com)
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Xu Y
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Wan W
The EMBO Journal
2026-06-01
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#immunity
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Benchmarking plant single cell RNA-sequencing sample processing strategies.
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Eekhout T
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Grones C
The EMBO Journal
2026-06-01
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#transcriptomics
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0
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Integrated multi-omics identifies distinct macrophage alterations during progression of metabolic dysfunction-associated steatohepatitis.
(nature.com)
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Boesch M
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Govaere O
Nature Genetics
2026-06-01
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#transcriptomics
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0
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Detecting unannotated splicing events in short-read RNA-seq with SAMI, a UMI-aware Nextflow pipeline.
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Mareschal S
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Bardel C
Bioinformatics
2026-06-01
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#transcriptomics
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0
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Netrin1 blockade alleviates resistance to chemotherapy in pancreatic cancer.
(nature.com)
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Roth G
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Mehlen P
Nature
2026-06-01
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#amr
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0
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MetaNet: a scalable and integrated tool for reproducible omics network analysis.
(academic.oup.com)
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Peng C
…
Jiang C
Bioinformatics
2026-06-01
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#network analysis
#metagenomics
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#transcriptomics
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0
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Spatiotemporal transcriptome atlas of human embryos after gastrulation.
(nature.com)
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Pan J
…
Huang H
Nature
2026-06-01
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#transcriptomics
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0
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Deep learning the TF regulatory code for gene expression.
(genome.cshlp.org)
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Li Y
…
Liu L
Genome Research
2026-06-01
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#transcriptomics
#modeling
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0
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mmContext: an open framework for multimodal contrastive learning of omics and text data.
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Menger J
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Hackenberg M
Bioinformatics
2026-06-01
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#multimodal
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0
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Polyclonal selection of immune checkpoint mutations in thyroid autoimmunity.
(nature.com)
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Nicola PA
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Martincorena I
Nature
2026-06-01
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#autoimmunity
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