|
0
|
|
Versatile SMAD2 and SMAD3 epitope-tagged mouse models for genomic profiling of TGFbeta signaling: Uncovering GDF9-SMAD2/3 targets.
(pnas.org)
|
Liao Z
…
Matzuk MM
PNAS
2026-04-07
|
#transcriptomics
#signaling
#transcription
#epigenomics
|
|
0
|
|
Haplotype-resolved telomere-to-telomere genome of Aphelenchus avenae implicates P5CS in nematode desiccation stress response.
(genome.cshlp.org)
|
Zhang Y
…
Dai D
Genome Research
2026-04-07
|
#assembly
#transcriptomics
#stress
#desiccation
#genome
|
|
0
|
|
Parallel analysis of replication timing, gene expression, and copy number with PARTAGE.
(genome.cshlp.org)
|
Sadu Murari LS
…
Rivera-Mulia JC
Genome Research
2026-04-07
|
#multi-omics
#replication timing
#transcriptomics
#copy number
#genome organization
|
|
0
|
|
A systems view on DNA damage response kinetics in Tetrahymena.
(genome.cshlp.org)
|
Nischwitz E
…
Butter F
Genome Research
2026-04-07
|
#transcriptomics
#proteomics
#dna damage
#systems biology
#kinetics
|
|
0
|
|
Hypergraph representations of single-cell RNA sequencing data for improved cell clustering.
(academic.oup.com)
|
He W
…
Eliassi-Rad T
Bioinformatics
2026-04-07
|
#transcriptomics
#clustering
#sequencing
#modeling
|
|
0
|
|
Graph statistics theory of individualized quantitative genetics under haplotype-resolved genome assembly.
(pnas.org)
|
Sun L
…
Wu R
PNAS
2026-04-07
|
#genetics
#genomics
#network analysis
#epistasis
#transcriptomics
|
|
0
|
|
Predicting condition-aware drug-induced transcriptional responses via a latent diffusion model.
(academic.oup.com)
|
Kim C
…
Yoo S
Bioinformatics
2026-04-07
|
#transcriptomics
#modeling
#drug discovery
#generative
#precision medicine
|
|
0
|
|
ACTB methylation regulates SMARCA4 genomic occupancy to promote translation and reduce adhesion in colorectal cancer cells.
(genome.cshlp.org)
|
Abaev-Schneiderman E
…
Levy D
Genome Research
2026-04-07
|
#transcriptomics
#cancer
#proteomics
#epigenetics
#chromatin
|
|
0
|
|
SpliceHarmonization: an integrated method for identifying RNA splicing events in therapeutics for splicing modulation.
(academic.oup.com)
|
Chen Y
…
Huh D
Bioinformatics
2026-04-07
|
#splicing
#transcriptomics
#isoforms
#therapeutics
|
|
0
|
|
Confounding factors in assessing the enriched expression of somatic mutant alleles in bulk tumor samples.
(genome.cshlp.org)
|
Hagiwara K
…
Zhang J
Genome Research
2026-04-07
|
#transcriptomics
#cancer
#mutation
#sequencing
|
|
0
|
|
Distinct inflammatory programming of thoracic cavity white adipose immune cells regulates influenza pathogenesis.
(academic.oup.com)
|
Ulanowicz CJ
…
Divanovic S
Journal of Infectious Diseases
2026-04-07
|
#inflammation
#immunity
#infection
#transcriptomics
#obesity
|
|
0
|
|
Sex and tissue resolved co-expression networks reveal a female placental-brain axis protective against prenatal PCB exposure.
(link.springer.com)
|
Chau KH
…
LaSalle JM
Genome Biology
2026-04-07
|
#transcriptomics
#placenta
#neurodevelopment
#sex-differences
#toxicology
|
|
0
|
|
Functional role of small extrachromosomal circular DNA in colorectal cancer.
(pnas.org)
|
Hariprakash JM
…
Regenberg B
PNAS
2026-04-07
|
#cancer
#eccdna
#gene amplification
#transcriptomics
#tumorigenesis
|
|
0
|
|
Scalable cell-specific coexpression networks for granular regulatory pattern discovery with NeighbourNet.
(genome.cshlp.org)
|
Deng Y
…
Le Cao KA
Genome Research
2026-04-07
|
#transcriptomics
#coexpression
#clustering
#network inference
#single-cell
|
|
0
|
|
High-fidelity bidirectional translation between single-cell transcriptomes and DNA methylomes with scBOND.
(genome.cshlp.org)
|
Lang K
…
Chen S
Genome Research
2026-04-07
|
#transcriptomics
#epigenetics
#single-cell
#modeling
|
|
0
|
|
Structure-preserving multivariate hypothesis testing for mass spectrometry imaging and single-cell data.
(academic.oup.com)
|
Liebenberg KE
…
Eberlin LS
Bioinformatics
2026-04-07
|
#proteomics
#transcriptomics
#statistical
#imaging
#heterogeneity
|
|
0
|
|
spRefine denoises and imputes spatial transcriptomic data with a reference-free framework powered by genomic language model.
(genome.cshlp.org)
|
Liu T
…
Zhao H
Genome Research
2026-04-07
|
#transcriptomics
#denoising
#imputation
#aging
|
|
0
|
|
Hereditary chronic pancreatitis induced plasticity cooperates with mutant Kras in early pancreatic carcinogenesis.
(gut.bmj.com)
|
Inamdar TV
…
Rosendahl J
Gut
2026-04-07
|
#pancreatitis
#carcinogenesis
#metaplasia
#inflammation
#transcriptomics
|
|
0
|
|
Nuclear Pirin promotes HCC by acting as a key inflammation-facilitating factor.
(gut.bmj.com)
|
Ma H
…
Li Q
Gut
2026-04-07
|
#inflammation
#cancer
#oxidative stress
#transcriptomics
|
|
0
|
|
Fibroblast pentose phosphate pathway activation upon decreased circPLCE1 exacerbates intestinal fibrosis in Crohn's disease.
(gut.bmj.com)
|
Zhou L
…
Mao R
Gut
2026-04-07
|
#fibrosis
#metabolism
#transcriptomics
#colitis
#fibroblast
|
|
0
|
|
Single-cell RNA-seq reveals trans-sialidase-like superfamily gene expression heterogeneity in Trypanosoma cruzi populations.
(elifesciences.org)
|
Inchausti L
…
Smircich P
eLife
2026-04-07
|
#transcriptomics
#single-cell
#virulence
#parasitism
#antigenic variation
|
|
0
|
|
AutoGERN: single-cell RNA-seq gene regulatory network inference via explicit link modeling and adaptive architectures.
(academic.oup.com)
|
Wang J
…
Luo X
Bioinformatics
2026-04-07
|
#neural network
#single-cell sequencing
#transcriptomics
#grn inference
#single-cell
|
|
0
|
|
Dynamic A-to-I RNA editing in response to gut microbiome in honey bees.
(genome.cshlp.org)
|
Duan Y
…
Luo S
Genome Research
2026-04-07
|
#transcriptomics
#microbiome
#rna editing
#gut-brain axis
#behavior
|
|
0
|
|
GRNFormer: accurate gene regulatory network inference using graph transformer.
(academic.oup.com)
|
Hegde A
…
Cheng J
Bioinformatics
2026-04-07
|
#gene regulation
#transcriptomics
#modeling
#single-cell
|
|
0
|
|
A novel deep learning-driven framework for improving lncRNA comprehensive annotation with LncADeep 2.0.
(academic.oup.com)
|
Zhou Y
…
Zhu H
Bioinformatics
2026-04-07
|
#transcriptomics
#annotation
#deep learning
#classification
|
|
0
|
|
SA2E: spatial-aware auto-encoder for cell type deconvolution of spatial transcriptomics data.
(academic.oup.com)
|
Ma Y
…
Ma X
Bioinformatics
2026-04-07
|
#transcriptomics
#deconvolution
#cell-type
#modeling
|
|
0
|
|
DeeDeeExperiment: building an infrastructure for integrating and managing omics data analysis results in R/Bioconductor.
(academic.oup.com)
|
Abassi N
…
Marini F
Bioinformatics
2026-04-07
|
#transcriptomics
#bioinformatics
#data management
#enrichment
|
|
0
|
|
Profiling the transcriptional regulatory network reveals putative shared regulatory elements within homoeologs in polyploid Brassica napus.
(link.springer.com)
|
Hu Y
…
Yang QY
Genome Biology
2026-04-07
|
#transcriptomics
#regulatory
#polyploid
#chromatin
#methylation
|
|
0
|
|
Cytotoxic T cell recognition of alpha-synuclein drives pathogenic immune responses in multiple system atrophy.
(pnas.org)
|
Moon JS
…
Robinson WH
PNAS
2026-04-07
|
#immunity
#neuroinflammation
#transcriptomics
#cytotoxicity
|
|
0
|
|
Microbiota-gut-muscle axis shapes fish muscle texture by regulating collagen synthesis.
(link.springer.com)
|
Wang Z
…
Zhang ML
Microbiome
2026-04-07
|
#microbiome
#metabolism
#colonization
#gnotobiotic
#transcriptomics
|
|
0
|
|
Pretraining improves prediction of genomic datasets across species.
(academic.oup.com)
|
Huang F
…
Song JHT
Bioinformatics
2026-04-07
|
#modeling
#transcriptomics
#transfer learning
#chromatin
|
|
0
|
|
mirtronDB 2.0: enhanced database with novel mirtron discoveries.
(academic.oup.com)
|
de Goes FR
…
Paschoal AR
Bioinformatics
2026-04-07
|
#transcriptomics
#database
#machine learning
#prediction
|
|
0
|
|
Functional genomics analysis of developing zebrafish and human endoderm reveals highly conserved cis-regulatory modules acting during vertebrate organogenesis.
(genome.cshlp.org)
|
Riley DM
…
Nelson AC
Genome Research
2026-04-07
|
#organogenesis
#cis-regulation
#phylogenomics
#transcriptomics
|
|
0
|
|
Single-nucleus multiomic profiling of the aging mouse substantia nigra reveals conserved gene alterations linked to Parkinson's disease.
(genome.cshlp.org)
|
Wang K
…
Ren B
Genome Research
2026-04-07
|
#transcriptomics
#single-cell
#aging
#neurodegeneration
#epigenetics
|