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0
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Artificial intelligence and infectious disease diagnostics: state of the art and future perspectives.
(linkinghub.elsevier.com)
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Miglietta L
…
Holmes AH
Lancet Infectious Diseases
2026-03-01
|
#diagnostics
#infection
#amr
#modeling
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0
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Model-based optimisation for teicoplanin dosing in patients undergoing maintenance haemodialysis.
(linkinghub.elsevier.com)
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Tandar ST
…
Eloot S
Clinical Microbiology and Infection
2026-03-01
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#pharmacokinetics
#modeling
#dosing
#haemodialysis
#antibiotic
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0
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Three-dimensional genome reorganization foreshadows zygotic genome activation in Drosophila.
(nature.com)
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Maziak N
…
Vaquerizas JM
Nature Genetics
2026-03-01
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#chromatin
#transcriptomics
#embryogenesis
#modeling
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0
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Modeling the evolutionary dynamics of clonal hematopoiesis.
(nature.com)
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Marzban S
…
West J
Nature Genetics
2026-03-01
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#modeling
#clonal_expansion
#hematopoiesis
#somatic mutation
#prediction
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0
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Reconstructing 3D transcriptional organization from spatial transcriptomics reveals consistent oncogenic translocations and developmental dynamics.
(academic.oup.com)
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Sheng Y
…
Cheng Li S
Briefings in Bioinformatics
2026-03-01
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#transcriptomics
#modeling
#cancer
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0
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An introduction to network meta-analyses in clinical microbiology and infectious diseases.
(linkinghub.elsevier.com)
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Seitidis G
…
Mavridis D
Clinical Microbiology and Infection
2026-03-01
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#meta-analysis
#infection
#modeling
#clinical
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0
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|
Comparing different methods for analysing hierarchical composite endpoints: two illustrative case studies with post hoc analyses of the BALANCE (Bacteraemia Antibiotic Length Actually Needed for Clinical Effectiveness) and CAMERA2 (Combination Antibiotics for methicillin-resistant Staphylococcus aureus) randomized clinical trials.
(linkinghub.elsevier.com)
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Ong SWX
…
Tong SYC
Clinical Microbiology and Infection
2026-03-01
|
#infection
#amr
#bacteremia
#modeling
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0
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Response to "Addressing biases and limitations in feature attribution for circRNA modification profiling".
(academic.oup.com)
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Li J
…
Zhang Y
Briefings in Bioinformatics
2026-03-01
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#transcriptomics
#modeling
#sequencing
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0
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Zero-shot benchmarking of RNA language models in structural, functional, and evolutionary learning.
(academic.oup.com)
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Wang H
…
Zhou Y
Briefings in Bioinformatics
2026-03-01
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#rna
#modeling
#evolution
#prediction
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0
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Generative design and validation of therapeutic peptides for glioblastoma based on a potential target ATP5A.
(academic.oup.com)
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Qian H
…
Xu L
Briefings in Bioinformatics
2026-03-01
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#peptide
#modeling
#cancer
#drug design
#validation
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0
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Predictive multispecies constraint-based metabolic modeling: case studies and best practices.
(academic.oup.com)
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Kaste JAM
…
Matthews ML
Briefings in Bioinformatics
2026-03-01
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#modeling
#metabolism
#microbiome
#interaction
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0
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The good, the bad, and the ugly: opportunities, challenges, and pitfalls in spatial proteomics modeling.
(academic.oup.com)
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Haque SY
…
Azim R
Briefings in Bioinformatics
2026-03-01
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#proteomics
#imaging
#modeling
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0
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MultiCell: geometric learning in multicellular development.
(nature.com)
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Yang H
…
Guo M
Nature Methods
2026-03-01
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#morphogenesis
#modeling
#embryogenesis
#geometry
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0
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Computational nanobody design using graph neural networks and Metropolis Monte Carlo sampling.
(academic.oup.com)
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Wang L
…
Huang Q
Briefings in Bioinformatics
2026-03-01
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#modeling
#protein
#therapeutics
#binding
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0
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Confidence scoring for deep learning-predicted antibody-antigen complexes: AntiConf as a precision-driven metric.
(academic.oup.com)
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Unsal S
…
Timucin E
Briefings in Bioinformatics
2026-03-01
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#protein structure prediction
#deep learning
#antibody
#modeling
#validation
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0
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Are we ready for causal discovery in biological systems using deep learning?
(academic.oup.com)
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Yeo HC
…
Selvarajoo K
Briefings in Bioinformatics
2026-03-01
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#causal inference
#modeling
#deep learning
#network analysis
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0
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Inferring cancer type-specific patterns of metastatic spread using Metient.
(nature.com)
|
Koyyalagunta D
…
Morris Q
Nature Methods
2026-03-01
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#metastasis
#modeling
#sequencing
#cancer
#phylogenomics
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0
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Spatial-ZEDNet : a unified spatial transcriptomics framework for detecting differential gene activation and expression.
(academic.oup.com)
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Egbon OA
…
Anchang B
Briefings in Bioinformatics
2026-03-01
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#transcriptomics
#differential expression
#inflammation
#modeling
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0
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Interplay of Spatial Structure and Interactions in Microbial Communities.
(sfamjournals.onlinelibrary.wiley.com)
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Warrier V
…
Momeni B
Environmental Microbiology
2026-03-01
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#microbiome
#modeling
#biofilm
#metabolism
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0
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A cancer-type-aware framework for robust multimodal survival prediction under missing modalities.
(academic.oup.com)
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Song Y
…
Lin M
Briefings in Bioinformatics
2026-03-01
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#prognosis
#cancer
#modeling
#multimodal
#transcriptomics
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0
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TF-loop: deciphering the transcription factor regulatory language for CTCF-mediated chromatin loop based on BERT.
(academic.oup.com)
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Qi YX
…
Wang YY
Briefings in Bioinformatics
2026-03-01
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#chromatin
#transcription
#modeling
#regulation
#binding
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0
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QBEmax is a sequence-permuted and internally protected base editor.
(nature.com)
|
Hu J
…
Zhao KT
Nature Biotechnology
2026-03-01
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#modeling
#genome editing
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0
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ORANGE: a machine learning approach for modeling tissue-specific aging from transcriptomic data.
(academic.oup.com)
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Jalal W
…
Rahman MS
Briefings in Bioinformatics
2026-03-01
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#transcriptomics
#modeling
#aging
#machine learning
#mortality
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0
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SpatialDG: a novel spatial domain identification method for spatially resolved transcriptomics data based on dual-graph neural network.
(academic.oup.com)
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Wu J
…
Izzi V
Briefings in Bioinformatics
2026-03-01
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#transcriptomics
#clustering
#modeling
#tissue
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0
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Integrating feature selection with unsupervised deep embedding for clustering single-cell RNA-seq data.
(academic.oup.com)
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Zhong C
…
Wei Z
Briefings in Bioinformatics
2026-03-01
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#transcriptomics
#clustering
#sequencing
#modeling
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0
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Artificial intelligence drives the identification and screening of novel antibiotics and antimicrobial peptides.
(academic.oup.com)
|
Zhou Q
…
Huang L
Briefings in Bioinformatics
2026-03-01
|
#amr
#screening
#modeling
#bacteriocin
|
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0
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Predicting onset of symptomatic Alzheimer's disease with plasma p-tau217 clocks.
(nature.com)
|
Petersen KK
…
Schindler SE
Nature Medicine
2026-03-01
|
#biomarker
#modeling
#prognosis
#tau
#neurodegeneration
|
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0
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AF2BIND: predicting small-molecule binding sites using the pair representation of AlphaFold2.
(nature.com)
|
Gazizov A
…
Polizzi NF
Nature Methods
2026-03-01
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#binding
#modeling
#prediction
#proteome
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0
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scSCCNIA: similarity matrix based contrastive clustering with neighbor information aggregation for single-cell RNA sequencing data.
(academic.oup.com)
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Wang J
…
Zheng CH
Briefings in Bioinformatics
2026-03-01
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#clustering
#transcriptomics
#sequencing
#modeling
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0
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Large language model agents for biological intelligence across genomics, proteomics, spatial biology, and biomedicine.
(academic.oup.com)
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Dip SA
…
Zhang L
Briefings in Bioinformatics
2026-03-01
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#bioinformatics
#proteomics
#genomics
#modeling
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0
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Enhancing cancer classification accuracy with a self-attention network using panel capture sequencing data.
(academic.oup.com)
|
Jia Y
…
Zhao Z
Briefings in Bioinformatics
2026-03-01
|
#sequencing
#cancer
#classification
#modeling
#mutation
|
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0
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Antibody-antigen neutralization prediction by integrating structural information distillation and physicochemical constraints.
(academic.oup.com)
|
Liu Y
…
Tian Y
Briefings in Bioinformatics
2026-03-01
|
#immunology
#modeling
#neutralization
#antibody
#therapeutics
|
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0
|
|
TensoGraph: a tensor-transformer framework for global-local drug synergy prediction on heterogeneous graphs.
(academic.oup.com)
|
Wang X
…
Li L
Briefings in Bioinformatics
2026-03-01
|
#drug synergy
#combination therapy
#modeling
#machine learning
#drug discovery
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0
|
|
Projected Effects of Changing Global Tuberculosis Epidemiology on Mycobacterium tuberculosis Immunoreactivity Prevalence, 2024-2050.
(wwwnc.cdc.gov)
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Machado M
…
Campbell JR
Emerging Infectious Diseases
2026-03-01
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#modeling
#immunity
#infection
#tb
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0
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|
Remote monitoring of heart failure exacerbations using a smartwatch.
(nature.com)
|
Gao Y
…
Ross HJ
Nature Medicine
2026-03-01
|
#modeling
#heart failure
#monitoring
#wearables
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0
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BCRInsight: an antibody language model to decode biological signals from BCR sequences.
(academic.oup.com)
|
Zhao H
…
Zhang F
Briefings in Bioinformatics
2026-03-01
|
#immunity
#sequencing
#modeling
#repertoire
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0
|
|
stVCR: spatiotemporal dynamics of single cells.
(nature.com)
|
Peng Q
…
Li T
Nature Methods
2026-03-01
|
#transcriptomics
#modeling
#differentiation
#migration
#proliferation
|
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0
|
|
A bio-inspired computational pipeline for antibody screening and repurposing.
(academic.oup.com)
|
Li J
…
Zhang H
Briefings in Bioinformatics
2026-03-01
|
#screening
#antibody
#computational
#modeling
#docking
|
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0
|
|
Benchmark competitiveness and generalization are not equivalent: a critical commentary on HybridSP.
(academic.oup.com)
|
Madrid M
…
Zablah I
Briefings in Bioinformatics
2026-03-01
|
#modeling
#docking
#validation
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0
|
|
Inferring cell differentiation maps from lineage tracing data.
(nature.com)
|
Sashittal P
…
Raphael BJ
Nature Methods
2026-03-01
|
#differentiation
#lineage
#modeling
|
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0
|
|
Sharing approaches in predictive genomics across animals, plants and humans.
(nature.com)
|
Arirangan S
…
Tegtmeyer M
Nature Genetics
2026-03-01
|
#genomics
#prediction
#modeling
#polygenic
|
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0
|
|
Guidance for 3D traction force microscopy today and in the next decade.
(nature.com)
|
Barrasa-Fano J
…
Van Oosterwyck H
Nature Methods
2026-03-01
|
#mechanobiology
#microscopy
#modeling
#cell-matrix
|
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0
|
|
NyxBind: enhancing deep neural representations for transcription factor binding site prediction via contrastive learning.
(academic.oup.com)
|
Yang X
…
Zhang Y
Briefings in Bioinformatics
2026-03-01
|
#transcriptomics
#modeling
#sequencing
#machine learning
|
|
0
|
|
An agentic system for rare disease diagnosis with traceable reasoning.
(nature.com)
|
Zhao W
…
Xie W
Nature
2026-03-01
|
#diagnosis
#modeling
#phenotype
#genetics
|
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0
|
|
PDTSyn: a parameter-decomposed transformer for domain-generalized cell line-aware drug synergy prediction.
(academic.oup.com)
|
Zeng B
…
Xu L
Briefings in Bioinformatics
2026-03-01
|
#drug synergy
#modeling
#machine learning
#cancer
#generalization
|
|
0
|
|
SigRescueR: a pan-system framework for noise correction and mutational signature identification across sequencing platforms.
(academic.oup.com)
|
Nguyen PT
…
Zhivagui M
Briefings in Bioinformatics
2026-03-01
|
#mutational signatures
#cancer
#sequencing
#modeling
#biomarker
|
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0
|
|
Integrative multi-omics analysis reveals microbiota alterations and clinical indicators predictive of pulmonary fibrosis progression following SARS-CoV-2 infection.
(academic.oup.com)
|
Liu C
…
Chen Y
Briefings in Bioinformatics
2026-03-01
|
#metagenomics
#microbiome
#transcriptomics
#fibrosis
#modeling
|
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0
|
|
Transformer-based multidimensional feature fusion for accurate prediction of lipid nanoparticles transfection efficiency.
(academic.oup.com)
|
Gong D
…
Li H
Briefings in Bioinformatics
2026-03-01
|
#delivery
#modeling
#machine learning
#rna
|
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0
|
|
EpGAT: integrating epigenetics and 3D genome structure to predict alternative splicing and polyadenylation.
(academic.oup.com)
|
Baul S
…
Zhang W
Briefings in Bioinformatics
2026-03-01
|
#splicing
#epigenetics
#modeling
#polyadenylation
#chromatin
|
|
0
|
|
A progressive fine-tuning framework with dynamic parameter selection for low-resource peptide-GPCR interaction prediction.
(academic.oup.com)
|
Liu M
…
Liu J
Briefings in Bioinformatics
2026-03-01
|
#modeling
#peptide
#transfer learning
|