|
0
|
|
GENEasso: a curated resource of credible disease-gene associations across complex diseases from GWAS summary statistics.
(academic.oup.com)
|
Jiang T
…
Gu N
Nucleic Acids Research
2026-01-06
|
#gene-association
#transcriptomics
#database
#genome-wide association
|
|
0
|
|
Spatial GWAS Atlas: a knowledgebase for decoding the genetic architecture of complex traits in spatial resolution.
(academic.oup.com)
|
Kang H
…
Zhao Y
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#genetics
#genome-wide association
|
|
0
|
|
scCT-DB, an omnibus for cancer patient-derived paired pre- and post-treatment single-cell transcriptomes to reveal drug perturbation and drug resistance mechanisms.
(academic.oup.com)
|
Ma S
…
Liu Z
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#cancer
#database
#single-cell
#amr
|
|
0
|
|
OncoDB 2.0: a comprehensive platform for integrated pan-cancer omics analysis.
(academic.oup.com)
|
Cho M
…
Wang X
Nucleic Acids Research
2026-01-06
|
#pan-cancer
#proteomics
#transcriptomics
#methylation
#mutation
|
|
0
|
|
RegNetwork 2025: an integrative data repository for gene regulatory networks in human and mouse.
(academic.oup.com)
|
Li B
…
Liu ZP
Nucleic Acids Research
2026-01-06
|
#database
#transcriptomics
#gene regulation
|
|
0
|
|
BV-BRC: a unified bacterial and viral bioinformatics resource with expanded functionality and AI integration.
(academic.oup.com)
|
Shukla M
…
Stevens RL
Nucleic Acids Research
2026-01-06
|
#genomics
#metagenomics
#assembly
#annotation
#transcriptomics
|
|
0
|
|
SmallBARNA 2026: a kingdom-wide bacterial sRNA resource.
(academic.oup.com)
|
Rishik S
…
Keller A
Nucleic Acids Research
2026-01-06
|
#srna
#transcriptomics
#virulence
#genome annotation
#database
|
|
0
|
|
MouseOmics: a multi-omics database for mouse biological study.
(academic.oup.com)
|
Tian X
…
Feng J
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#proteomics
#metabolomics
#database
#genomics
|
|
0
|
|
LnCeVar 2.0: an updated resource and web tools for genomic variations disrupting ceRNA networks from single-cell/spatial transcriptomics data.
(academic.oup.com)
|
Guo Q
…
Wang P
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#cerna
#single-cell
#cancer
#biomarker
|
|
0
|
|
Gene duplication, horizontal gene transfer, and trait trade-offs drive evolution of postfire resource acquisition in pyrophilous fungi.
(pnas.org)
|
Sari E
…
Glassman SI
PNAS
2026-01-06
|
#comparative genomics
#transcriptomics
#metabolism
#evolution
#horizontal transfer
|
|
0
|
|
PolyA_DB v4: systematic polyA site identification and isoform annotation in human and mouse genomes using 3' end and long-read sequencing data.
(academic.oup.com)
|
Yu S
…
Tian B
Nucleic Acids Research
2026-01-06
|
#polyadenylation
#transcriptomics
#isoform
#sequencing
#annotation
|
|
0
|
|
PCsRNAdb: a comprehensive resource of small noncoding RNAs across cancers.
(academic.oup.com)
|
Huang R
…
Zhu Z
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#cancer
#biomarker
#database
#microrna
|
|
0
|
|
PRECOG update: an augmented resource of clinical outcome associations with gene expression for adult, pediatric, and immunotherapy cohorts.
(academic.oup.com)
|
Benard BA
…
Gentles AJ
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#prognosis
#cancer
#immunotherapy
#biomarker
|
|
0
|
|
GEAR: an integrated atlas of gene expression dynamics in Arabidopsis thaliana.
(academic.oup.com)
|
Endo M
…
Takahashi N
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#circadian
#database
#meta-analysis
|
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0
|
|
Intrinsic OASL expression governs heterogeneity in interferon induction during influenza A virus infection.
(pnas.org)
|
Rivera-Cardona J
…
Brooke CB
PNAS
2026-01-06
|
#immunity
#transcriptomics
#infection
#inflammation
|
|
0
|
|
Charting the expression landscape of human long non-coding RNAs across diverse biological contexts with LncExpDB 2.0.
(academic.oup.com)
|
Qi Y
…
Ma L
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#expression
#database
#coexpression
#ncrna
|
|
0
|
|
ASTRA: a comprehensive resource of stress-induced transcriptional activity in human cell lines.
(academic.oup.com)
|
Tsifintaris M
…
Giannakakis A
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#stress
#database
#rna
#sequencing
|
|
0
|
|
InsectBase 3.0: a comprehensive multi-omics resource for insects.
(academic.oup.com)
|
Wang Z
…
He K
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#proteomics
#genomics
#database
#assembly
|
|
0
|
|
connectomeDB2025: a rigorously curated, multi-species resource of experimentally supported ligand-receptor interactions.
(academic.oup.com)
|
Liu P
…
Forrest ARR
Nucleic Acids Research
2026-01-06
|
#ligand-receptor
#cell-cell communication
#transcriptomics
#database
#curation
|
|
0
|
|
Gramene 2025: expanded comparative genomics and pathway resources, integrated search, and pan-genome portals for crop research.
(academic.oup.com)
|
Olson A
…
Ware D
Nucleic Acids Research
2026-01-06
|
#pangenome
#comparative genomics
#transcriptomics
#pathway analysis
#plants
|
|
0
|
|
Expression Atlas in 2026: enabling FAIR and open expression data through community collaboration and integration.
(academic.oup.com)
|
Madrigal P
…
Ernst C
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#database
#single-cell
#proteomics
#integration
|
|
0
|
|
The ChickenGTEx portal: a pan-tissue catalogue of regulatory variants shaping transcriptomic and phenotypic diversity.
(academic.oup.com)
|
Hou Y
…
Zhang Z
Nucleic Acids Research
2026-01-06
|
#qtl
#transcriptomics
#eqtl
#epigenetics
#genotype
|
|
0
|
|
GPSAdb 2.0: an expanded atlas of gene-perturbation transcriptomes with enhanced tools for regulatory gene discovery.
(academic.oup.com)
|
Guo S
…
Liu S
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#gene perturbation
#knockdown
#differential expression
#regulation
|
|
0
|
|
CIRCpedia v3: an interactive database for circular RNA characterization and functional exploration.
(academic.oup.com)
|
Zhai SN
…
Yang L
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#annotation
#database
#rna
#sequencing
|
|
0
|
|
iFish: a comprehensive multi-omics database for fish genetics, transcriptional regulation, and epigenetic research.
(academic.oup.com)
|
Liu R
…
Gao ZX
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#epigenomics
#proteomics
#genomics
#aquaculture
|
|
0
|
|
CRESTA: a comprehensive transcriptome atlas for cellular response to external stressors.
(academic.oup.com)
|
Wang H
…
Zuo Z
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#stress response
#database
#toxicity
#drug discovery
|
|
0
|
|
NONCODE v7.0: updated lncRNA resource integrating scRNA-seq data encompassing immune baseline, development, and disease.
(academic.oup.com)
|
Liu H
…
Zhao Y
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#database
#immunity
#ncrna
#single-cell sequencing
|
|
0
|
|
scMOVIR: a single-cell multi-omics database for human viral infections and immune responses.
(academic.oup.com)
|
Zhang X
…
Zhou Z
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#immunity
#infection
#proteomics
#vaccination
|
|
0
|
|
TWAS atlas 2.0: an updated data resource for transcriptome-wide association studies.
(academic.oup.com)
|
Gao H
…
Xiao J
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#eqtl
#colocalization
#fine mapping
#genome-wide association
|
|
0
|
|
So3D: a comprehensive three-dimensional spatial omics resource for decoding tissue architecture in physiology and disease.
(academic.oup.com)
|
Zhao H
…
Wang L
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#tissue
#single-cell
#database
|
|
0
|
|
The mouse Gene Expression Database (GXD): 2026 update.
(academic.oup.com)
|
Smith CM
…
Ringwald M
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#database
#sequencing
|
|
0
|
|
OmniPath: integrated knowledgebase for multi-omics analysis.
(academic.oup.com)
|
Turei D
…
Saez-Rodriguez J
Nucleic Acids Research
2026-01-06
|
#proteomics
#transcriptomics
#modeling
#metabolism
|
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0
|
|
Unravelling the triad of penicillin-binding proteins, beta-lactamase activity, and mRNA dynamics in Pseudomonas aeruginosa AmpC induction.
(academic.oup.com)
|
Montaner M
…
Moya B
Journal of Antimicrobial Chemotherapy
2026-01-06
|
#amr
#transcriptomics
#induction
|
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0
|
|
CellSNVReg: a multidimensional resource for SNV-mediated regulatory perturbations in single-cell and spatial omics.
(academic.oup.com)
|
Shi J
…
Shao T
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#single-cell
#regulatory
#variants
|
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0
|
|
Maintaining microbiota across diverse symbiotic organs in Euprymna scolopes: Insights into shared immune responses.
(pnas.org)
|
Vijayan N
…
Nyholm SV
PNAS
2026-01-06
|
#symbiosis
#immunity
#transcriptomics
#microbiota
#colonization
|
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0
|
|
Food absence is a cue for metamorphosis in the solitary bee Megachile rotundata through a conserved physiological mechanism.
(pnas.org)
|
Grula CC
…
Bowsher JH
PNAS
2026-01-06
|
#metamorphosis
#endocrinology
#transcriptomics
#hormone
|
|
0
|
|
ViMIC 2.0: an updated database of human disease-related viral mutations, integration sites, and multi-omics data.
(academic.oup.com)
|
Huang C
…
Wang Y
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#virology
#sequencing
#mutation
#integration
|
|
0
|
|
Antagonistic regulation of nitrogen and drought signaling mediated by NIN-like protein 7 transcription factor in Arabidopsis thaliana.
(pnas.org)
|
Johnson NR
…
Alvarez JM
PNAS
2026-01-06
|
#transcriptomics
#signal transduction
#stress response
#chromatin immunoprecipitation
#drought
|
|
0
|
|
RNAPaceDB: a dedicated database to dissect RNA velocity across diverse cell types.
(academic.oup.com)
|
Liu H
…
Wang S
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#single-cell
#sequencing
#database
#gene expression
|
|
0
|
|
DisCP-Atlas: a comprehensive resource mapping cellular processes to complex diseases.
(academic.oup.com)
|
Wang FQ
…
Cao C
Nucleic Acids Research
2026-01-06
|
#genome-wide association
#transcriptomics
#single-cell
#pathway
#disease-association
|
|
0
|
|
scGeneBank: cross-species screening of functional gene sets at single-cell resolution.
(academic.oup.com)
|
Qin S
…
Chen D
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#single-cell
#comparative
#database
|
|
0
|
|
Rare Cancer Explorer 1.0 (RaCE 1.0): a dedicated database and analytical platform focused on rare cancers.
(academic.oup.com)
|
Chen Y
…
Lu J
Nucleic Acids Research
2026-01-06
|
#cancer
#transcriptomics
#immunotherapy
#drug sensitivity
#database
|
|
0
|
|
MODOMICS: a database of RNA modifications and related information. 2025 update and 20th anniversary.
(academic.oup.com)
|
Sordyl D
…
Bujnicki JM
Nucleic Acids Research
2026-01-06
|
#epigenomics
#rna modification
#database
#transcriptomics
#bioinformatics
|
|
0
|
|
TE-SCALE: a comprehensive database for exploring transposable element expression across human cancers at single-cell resolution.
(academic.oup.com)
|
Meng X
…
Jiang L
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#cancer
#single-cell
#biomarker
#database
|
|
0
|
|
PBMCpedia: a harmonized PBMC scRNA-seq database with unified mapping and enhanced celltype annotation.
(academic.oup.com)
|
Hoffmann ES
…
Grandke F
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#immunity
#integration
#annotation
#proteomics
|
|
0
|
|
NapRNAdb: a multispecies repository and analytical platform for napRNA discovery and functional annotation.
(academic.oup.com)
|
Xuan J
…
He QY
Nucleic Acids Research
2026-01-06
|
#ncrna
#transcriptomics
#database
#annotation
#phylogenomics
|
|
0
|
|
TEDD: a comprehensive database for translation efficiency dynamics.
(academic.oup.com)
|
Lei W
…
Chen F
Nucleic Acids Research
2026-01-06
|
#translation
#transcriptomics
#ribosome
#database
#gene expression
|
|
0
|
|
ATACdb 2.0: a comprehensive chromatin accessibility database of human and mouse.
(academic.oup.com)
|
Fang QL
…
Wang QY
Nucleic Acids Research
2026-01-06
|
#chromatin
#accessibility
#transcriptomics
#epigenetics
#database
|
|
0
|
|
exoRBase 3.0: an updated resource for extracellular RNAs from human biofluids.
(academic.oup.com)
|
Yu W
…
Huang S
Nucleic Acids Research
2026-01-06
|
#biomarker
#transcriptomics
#liquid biopsy
#extracellular vesicles
|
|
0
|
|
CircTarget: a comprehensive database of circRNA-target RNA interactions across multiple cell types.
(academic.oup.com)
|
Zhang H
…
Xue Y
Nucleic Acids Research
2026-01-06
|
#ncrna
#transcriptomics
#database
#rna-rna interactions
#gene regulation
|