|
0
|
|
ClinMAVE: a curated database for clinical application of data from multiplexed assays of variant effect.
(academic.oup.com)
|
Ma C
…
Wang X
Nucleic Acids Research
2026-01-06
|
#variant
#mave
#clinical
#database
#cancer
|
|
0
|
|
scCT-DB, an omnibus for cancer patient-derived paired pre- and post-treatment single-cell transcriptomes to reveal drug perturbation and drug resistance mechanisms.
(academic.oup.com)
|
Ma S
…
Liu Z
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#cancer
#database
#single-cell
#amr
|
|
0
|
|
The European Nucleotide Archive in 2025.
(academic.oup.com)
|
David Y
…
Ugis S
Nucleic Acids Research
2026-01-06
|
#sequencing
#database
#metagenomics
#biodiversity
|
|
0
|
|
VARIDT 4.0: distribution variability of drug transporters.
(academic.oup.com)
|
Li Y
…
Zhu F
Nucleic Acids Research
2026-01-06
|
#transporters
#pharmacokinetics
#drug metabolism
#database
#heterogeneity
|
|
0
|
|
PersADE: a database of personalized adverse drug events and their underlying molecular mechanisms.
(academic.oup.com)
|
Yu Z
…
Zhu F
Nucleic Acids Research
2026-01-06
|
#pharmacovigilance
#precision medicine
#drug safety
#toxicology
#database
|
|
0
|
|
RegNetwork 2025: an integrative data repository for gene regulatory networks in human and mouse.
(academic.oup.com)
|
Li B
…
Liu ZP
Nucleic Acids Research
2026-01-06
|
#database
#transcriptomics
#gene regulation
|
|
0
|
|
SmallBARNA 2026: a kingdom-wide bacterial sRNA resource.
(academic.oup.com)
|
Rishik S
…
Keller A
Nucleic Acids Research
2026-01-06
|
#srna
#transcriptomics
#virulence
#genome annotation
#database
|
|
0
|
|
The IPD-IMGT/HLA database: recent developments in sequence submission.
(academic.oup.com)
|
Barker DJ
…
Robinson J
Nucleic Acids Research
2026-01-06
|
#hla
#database
#sequencing
#polymorphism
#immunogenetics
|
|
0
|
|
ResMicroDb: a comprehensive database and analysis platform for the human respiratory microbiome.
(academic.oup.com)
|
Ji X
…
Li M
Nucleic Acids Research
2026-01-06
|
#microbiome
#metagenomics
#database
#taxonomy
|
|
0
|
|
CD-CODE 2.0: an enhanced condensate knowledgebase integrating pathobiology, condensate modulating drugs, and host-pathogen interactions.
(academic.oup.com)
|
Kuznetsova K
…
Toth-Petroczy A
Nucleic Acids Research
2026-01-06
|
#condensates
#host-pathogen
#database
#therapeutics
#pathobiology
|
|
0
|
|
MouseOmics: a multi-omics database for mouse biological study.
(academic.oup.com)
|
Tian X
…
Feng J
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#proteomics
#metabolomics
#database
#genomics
|
|
0
|
|
Ribocentre-aptamer: an integrative, structure-focused database for RNA aptamers.
(academic.oup.com)
|
Lu Z
…
Miao Z
Nucleic Acids Research
2026-01-06
|
#aptamer
#rna
#binding
#database
|
|
0
|
|
EcoDrug PLUS: an advanced database for drug target conservation analysis and environmental risk assessment.
(academic.oup.com)
|
Legehar A
…
Xhaard H
Nucleic Acids Research
2026-01-06
|
#database
#ecotoxicology
#phylogenomics
#chemoinformatics
|
|
0
|
|
riboCIRC v2.0: an expanded resource for translatable CircRNAs.
(academic.oup.com)
|
Xu Y
…
Wang H
Nucleic Acids Research
2026-01-06
|
#translation
#proteomics
#database
#annotation
#ncrna
|
|
0
|
|
Metalog: curated and harmonised contextual data for global metagenomics samples.
(academic.oup.com)
|
Kuhn M
…
Bork P
Nucleic Acids Research
2026-01-06
|
#metagenomics
#microbiome
#metadata
#taxonomy
#database
|
|
0
|
|
PCsRNAdb: a comprehensive resource of small noncoding RNAs across cancers.
(academic.oup.com)
|
Huang R
…
Zhu Z
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#cancer
#biomarker
#database
#microrna
|
|
0
|
|
JoGo 1.0: the ACTG hierarchical nomenclature and database covering 4.7 million haplotypes across 19,194 human genes.
(academic.oup.com)
|
Nagasaki M
…
Kawai Y
Nucleic Acids Research
2026-01-06
|
#haplotype
#sequencing
#genomics
#variation
#database
|
|
0
|
|
Bovine Genome Database: new curated collection of selective sweeps in bovine populations across the world.
(academic.oup.com)
|
Kambal S
…
Elsik CG
Nucleic Acids Research
2026-01-06
|
#genomics
#selection
#cattle
#database
#quantitative trait loci
|
|
0
|
|
TYGS and LPSN in 2025: a Global Core Biodata Resource for genome-based classification and nomenclature of prokaryotes within DSMZ Digital Diversity.
(academic.oup.com)
|
Freese HM
…
Goker M
Nucleic Acids Research
2026-01-06
|
#taxonomy
#prokaryotes
#phylogenomics
#nomenclature
#database
|
|
0
|
|
RBP2GO 2.0: Integrating disease associations and sequence features to explore RNA-binding protein functions.
(academic.oup.com)
|
Cantarella S
…
Caudron-Herger M
Nucleic Acids Research
2026-01-06
|
#rna binding
#proteomics
#database
#disease
|
|
0
|
|
CircTarget: a comprehensive database of circRNA-target RNA interactions across multiple cell types.
(academic.oup.com)
|
Zhang H
…
Xue Y
Nucleic Acids Research
2026-01-06
|
#ncrna
#transcriptomics
#database
#rna-rna interactions
#gene regulation
|
|
0
|
|
MolGlueDB: an online database of molecular glues.
(academic.oup.com)
|
Wang X
…
Qin C
Nucleic Acids Research
2026-01-06
|
#proteolysis
#drug discovery
#protein degradation
#database
|
|
0
|
|
SEdb 3.0: a comprehensive super-enhancer database across multiple species.
(academic.oup.com)
|
Song S
…
Li C
Nucleic Acids Research
2026-01-06
|
#enhancer
#epigenomics
#gene regulation
#chromatin
#database
|
|
0
|
|
GlycoRNAdb: a database of glycoRNA sequences, structures, abundance, and glycan information across tissues and cell lines.
(academic.oup.com)
|
Zheng C
…
Zheng L
Nucleic Acids Research
2026-01-06
|
#glycosylation
#transcriptomics
#database
#immunity
|
|
0
|
|
Medicines, Diseases, Indications, and Contraindications (MeDIC): a foundational resource to support drug repurposing.
(academic.oup.com)
|
DeLuca M
…
Tropsha A
Nucleic Acids Research
2026-01-06
|
#drug-repurposing
#knowledge graph
#database
#ontology
|
|
0
|
|
AlphaFold Protein Structure Database 2025: a redesigned interface and updated structural coverage.
(academic.oup.com)
|
Bertoni D
…
Velankar S
Nucleic Acids Research
2026-01-06
|
#proteomics
#database
#prediction
|
|
0
|
|
MiMeDB 2.0: the Human Microbial Metabolome Database for 2026.
(academic.oup.com)
|
Kruger R
…
Wishart DS
Nucleic Acids Research
2026-01-06
|
#metabolism
#microbiome
#metabolomics
#database
#annotation
|
|
0
|
|
SomaMutDB 2.0: A comprehensive database for exploring somatic mutations and their functional impact in normal human tissues.
(academic.oup.com)
|
Shea A
…
Dong X
Nucleic Acids Research
2026-01-06
|
#database
#somatic_mutations
#sequencing
#annotation
#aging
|
|
0
|
|
DRESIS 2.0: the comprehensive landscape of drug resistance information.
(academic.oup.com)
|
Sun X
…
Zhu F
Nucleic Acids Research
2026-01-06
|
#amr
#metabolism
#protein structure
#database
|
|
0
|
|
PMADS: an integrated database of curated and proteomics-inferred associations between protein post-translational modifications and drug sensitivity.
(academic.oup.com)
|
Zheng J
…
Wang H
Nucleic Acids Research
2026-01-06
|
#proteomics
#post-translational-modifications
#drug sensitivity
#database
|
|
0
|
|
DeepSpaceDB: a spatial transcriptomics atlas for interactive in-depth analysis of tissues and tissue microenvironments.
(academic.oup.com)
|
Honcharuk V
…
Vandenbon A
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#visualization
#database
|
|
0
|
|
PRIME: a database for 16S rRNA microbiome data with phenotypic reference and comprehensive metadata.
(academic.oup.com)
|
Zhang Z
…
Wang T
Nucleic Acids Research
2026-01-06
|
#microbiome
#sequencing
#database
#metagenomics
#taxonomy
|
|
0
|
|
GEAR: an integrated atlas of gene expression dynamics in Arabidopsis thaliana.
(academic.oup.com)
|
Endo M
…
Takahashi N
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#circadian
#database
#meta-analysis
|
|
0
|
|
The PROSITE database for protein families, domains, and sites.
(academic.oup.com)
|
Sigrist CJA
…
Bridge A
Nucleic Acids Research
2026-01-06
|
#protein
#domains
#annotation
#database
|
|
0
|
|
RMPore: a comprehensive database of single-molecule RNA modifications detected by Nanopore direct RNA sequencing.
(academic.oup.com)
|
Lin Z
…
Hu K
Nucleic Acids Research
2026-01-06
|
#rna modification
#sequencing
#transcriptomics
#database
|
|
0
|
|
IVCDB: a comprehensive database of iridoviruses for epidemiology, genetic evolution, and disease management.
(academic.oup.com)
|
Liang M
…
He J
Nucleic Acids Research
2026-01-06
|
#virology
#phylogenomics
#database
#epidemiology
#evolution
|
|
0
|
|
PhaSepDB 3.0: a comprehensive knowledgebase of phase separation-related proteins from AI-assisted curation.
(academic.oup.com)
|
You K
…
Li T
Nucleic Acids Research
2026-01-06
|
#phase separation
#database
#curation
#proteomics
#machine learning
|
|
0
|
|
EWAS Open Platform 2026: a deeply integrated resource for epigenome-wide association studies.
(academic.oup.com)
|
Yang F
…
Li R
Nucleic Acids Research
2026-01-06
|
#epigenomics
#methylation
#association
#database
|
|
0
|
|
Charting the expression landscape of human long non-coding RNAs across diverse biological contexts with LncExpDB 2.0.
(academic.oup.com)
|
Qi Y
…
Ma L
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#expression
#database
#coexpression
#ncrna
|
|
0
|
|
ASTRA: a comprehensive resource of stress-induced transcriptional activity in human cell lines.
(academic.oup.com)
|
Tsifintaris M
…
Giannakakis A
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#stress
#database
#rna
#sequencing
|
|
0
|
|
Open Enzyme Database: a community-wide repository for sharing enzyme data.
(academic.oup.com)
|
Yuan L
…
Zhao H
Nucleic Acids Research
2026-01-06
|
#database
#enzyme
#biocatalysis
#cheminformatics
#modeling
|
|
0
|
|
CisBP-RNA: a web resource for eukaryotic RNA-binding proteins and their motifs.
(academic.oup.com)
|
Rosado-Tristani DA
…
Weirauch MT
Nucleic Acids Research
2026-01-06
|
#rna binding
#motif
#database
#post-transcriptional
#eukaryotic
|
|
0
|
|
theRNA: a curated knowledgebase of functional RNA therapeutics spanning diverse modalities and disease applications.
(academic.oup.com)
|
Zhou Y
…
Zuo Z
Nucleic Acids Research
2026-01-06
|
#therapeutics
#rna
#database
#curation
|
|
0
|
|
SILVA in 2026: a global core biodata resource for rRNA within the DSMZ digital diversity.
(academic.oup.com)
|
Chuvochina M
…
Reimer LC
Nucleic Acids Research
2026-01-06
|
#taxonomy
#database
#microbiome
#sequencing
#rna
|
|
0
|
|
RCSB Protein Data Bank: Delivering integrative structures alongside experimental structures and computed structure models.
(academic.oup.com)
|
Vallat B
…
Burley SK
Nucleic Acids Research
2026-01-06
|
#modeling
#database
#crystallography
|
|
0
|
|
InsectBase 3.0: a comprehensive multi-omics resource for insects.
(academic.oup.com)
|
Wang Z
…
He K
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#proteomics
#genomics
#database
#assembly
|
|
0
|
|
MGDB: a curated database for molecular glues.
(academic.oup.com)
|
Li C
…
Wang L
Nucleic Acids Research
2026-01-06
|
#database
#drug design
#degradation
#admet
#protein-protein interaction
|
|
0
|
|
connectomeDB2025: a rigorously curated, multi-species resource of experimentally supported ligand-receptor interactions.
(academic.oup.com)
|
Liu P
…
Forrest ARR
Nucleic Acids Research
2026-01-06
|
#ligand-receptor
#cell-cell communication
#transcriptomics
#database
#curation
|
|
0
|
|
Macrocycle-DB: a comprehensive database for macrocycle-based drug discovery.
(academic.oup.com)
|
Jiang M
…
Zhou Y
Nucleic Acids Research
2026-01-06
|
#drug discovery
#database
#computational
#protein-ligand
|
|
0
|
|
BRENDA in 2026: a Global Core Biodata Resource for functional enzyme and metabolic data within the DSMZ Digital Diversity.
(academic.oup.com)
|
Hauenstein J
…
Bunk B
Nucleic Acids Research
2026-01-06
|
#metabolism
#enzyme
#database
#curation
|