|
0
|
|
MicrobialScope: an integrated genomic resource with rich annotations across bacteria, archaea, fungi, and viruses.
(academic.oup.com)
|
Feng X
…
Li SC
Nucleic Acids Research
2026-01-06
|
#genomics
#annotation
#database
#metagenomics
|
|
0
|
|
EVmiRNA2.0: an updated database for miRNA expression in comprehensive human extracellular vesicles.
(academic.oup.com)
|
Xie GY
…
Lei Q
Nucleic Acids Research
2026-01-06
|
#microrna
#extracellular vesicles
#sequencing
#database
|
|
0
|
|
Expression Atlas in 2026: enabling FAIR and open expression data through community collaboration and integration.
(academic.oup.com)
|
Madrigal P
…
Ernst C
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#database
#single-cell
#proteomics
#integration
|
|
0
|
|
Meta-virus resource (MetaVR): expanding the frontiers of viral diversity with 24 million uncultivated virus genomes.
(academic.oup.com)
|
Fiamenghi MB
…
Kyrpides NC
Nucleic Acids Research
2026-01-06
|
#metagenomics
#virology
#taxonomy
#database
|
|
0
|
|
FerrDb V3: expanding the manually curated resource for regulators and disease associations from ferroptosis to regulated cell death.
(academic.oup.com)
|
Zhou N
…
Yuan X
Nucleic Acids Research
2026-01-06
|
#ferroptosis
#apoptosis
#database
#curation
|
|
0
|
|
ChEBI: re-engineered for a sustainable future.
(academic.oup.com)
|
Malik A
…
O'Boyle NM
Nucleic Acids Research
2026-01-06
|
#ontology
#database
#curation
#metabolism
|
|
0
|
|
The mouse Gene Expression Database (GXD): 2026 update.
(academic.oup.com)
|
Smith CM
…
Ringwald M
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#database
#sequencing
|
|
0
|
|
gutMSNP: a comprehensive database for human gut microbial single-nucleotide polymorphisms.
(academic.oup.com)
|
Qian K
…
Zhang X
Nucleic Acids Research
2026-01-06
|
#microbiome
#genomics
#polymorphism
#database
|
|
0
|
|
CCCdb: a comprehensive manually curated database for cell-cell communication in human and mouse.
(academic.oup.com)
|
Xu M
…
Shang D
Nucleic Acids Research
2026-01-06
|
#cell-cell communication
#database
#signaling
#curation
#tissue homeostasis
|
|
0
|
|
EMBL's European Bioinformatics Institute (EMBL-EBI) in 2025.
(academic.oup.com)
|
Thakur M
…
McEntyre J
Nucleic Acids Research
2026-01-06
|
#bioinformatics
#sequencing
#database
|
|
0
|
|
PDBe: enhanced structural data exploration to facilitate discovery.
(academic.oup.com)
|
Querino Lima Afonso M
…
Velankar S
Nucleic Acids Research
2026-01-06
|
#protein
#database
#visualization
|
|
0
|
|
TPDdb: the comprehensive database of targeted protein degrader.
(academic.oup.com)
|
Qin X
…
Zhu F
Nucleic Acids Research
2026-01-06
|
#database
#proteolysis
#drug discovery
#protein structure
|
|
0
|
|
SIGNOR 4.0: the 2025 update with focus on phosphorylation data.
(academic.oup.com)
|
Lo Surdo P
…
Perfetto L
Nucleic Acids Research
2026-01-06
|
#phosphorylation
#signaling
#database
#curation
#modeling
|
|
0
|
|
MassBank: an open and FAIR mass spectral data resource.
(academic.oup.com)
|
Neumann S
…
Schymanski EL
Nucleic Acids Research
2026-01-06
|
#spectroscopy
#metabolomics
#database
#data integration
|
|
0
|
|
Virus taxonomy: the database of the International Committee on Taxonomy of Viruses.
(academic.oup.com)
|
Black EJ
…
Lefkowitz EJ
Nucleic Acids Research
2026-01-06
|
#taxonomy
#virology
#database
#classification
|
|
0
|
|
Genome Variation Map: a platform for the analysis and integration of genomic variation.
(academic.oup.com)
|
Bai X
…
Song S
Nucleic Acids Research
2026-01-06
|
#genetics
#genomic variation
#sequencing
#database
#annotation
|
|
0
|
|
MITE: the Minimum Information about a Tailoring Enzyme database for capturing specialized metabolite biosynthesis.
(academic.oup.com)
|
Rutz A
…
Zdouc MM
Nucleic Acids Research
2026-01-06
|
#metabolism
#biosynthesis
#database
#enzymes
#modeling
|
|
0
|
|
Enzyme Engineering Database (EnzEngDB): a platform for sharing and interpreting sequence-function relationships across protein engineering campaigns.
(academic.oup.com)
|
Long Y
…
Mora A
Nucleic Acids Research
2026-01-06
|
#protein design
#enzyme
#machine learning
#database
|
|
0
|
|
APD6: the antimicrobial peptide database is expanded to promote research and development by deploying an unprecedented information pipeline.
(academic.oup.com)
|
Wang G
…
Wang Z
Nucleic Acids Research
2026-01-06
|
#antimicrobial peptides
#amr
#database
#prediction
#drug development
|
|
0
|
|
PaxDb v6.0: reprocessed, LLM-selected, curated protein abundance data across organisms.
(academic.oup.com)
|
Huang Q
…
von Mering C
Nucleic Acids Research
2026-01-06
|
#proteomics
#mass spectrometry
#database
#protein abundance
#standardization
|
|
0
|
|
RNAPaceDB: a dedicated database to dissect RNA velocity across diverse cell types.
(academic.oup.com)
|
Liu H
…
Wang S
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#single-cell
#sequencing
#database
#gene expression
|
|
0
|
|
BioSamples database: the global hub for sample metadata and multi-omics integration.
(academic.oup.com)
|
Gupta D
…
Rajan J
Nucleic Acids Research
2026-01-06
|
#metadata
#database
#integration
|
|
0
|
|
M6AREG 2.0: the landscape of m6A-centered crosstalk with diverse epigenetic regulation.
(academic.oup.com)
|
Yang M
…
Zhu F
Nucleic Acids Research
2026-01-06
|
#epigenetics
#rna modification
#database
#biomarker
#drug response
|
|
0
|
|
scGeneBank: cross-species screening of functional gene sets at single-cell resolution.
(academic.oup.com)
|
Qin S
…
Chen D
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#single-cell
#comparative
#database
|
|
0
|
|
Rare Cancer Explorer 1.0 (RaCE 1.0): a dedicated database and analytical platform focused on rare cancers.
(academic.oup.com)
|
Chen Y
…
Lu J
Nucleic Acids Research
2026-01-06
|
#cancer
#transcriptomics
#immunotherapy
#drug sensitivity
#database
|
|
0
|
|
The IUPHAR/BPS Guide to PHARMACOLOGY in 2026.
(academic.oup.com)
|
Harding SD
…
Davies JA
Nucleic Acids Research
2026-01-06
|
#pharmacology
#database
#ligand
#antibacterial
#curation
|
|
0
|
|
The 3D Genome Browser 2.0: an enhanced online platform for visualizing and analyzing 3D genome architecture.
(academic.oup.com)
|
Yu S
…
Yue F
Nucleic Acids Research
2026-01-06
|
#chromatin
#visualization
#genomics
#database
|
|
0
|
|
MODOMICS: a database of RNA modifications and related information. 2025 update and 20th anniversary.
(academic.oup.com)
|
Sordyl D
…
Bujnicki JM
Nucleic Acids Research
2026-01-06
|
#epigenomics
#rna modification
#database
#transcriptomics
#bioinformatics
|
|
0
|
|
CircleBase V2: an eccDNA annotation platform across cancers and species.
(academic.oup.com)
|
Wei L
…
Zhao X
Nucleic Acids Research
2026-01-06
|
#cancer
#database
#genomics
#annotation
#comparative
|
|
0
|
|
TE-SCALE: a comprehensive database for exploring transposable element expression across human cancers at single-cell resolution.
(academic.oup.com)
|
Meng X
…
Jiang L
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#cancer
#single-cell
#biomarker
#database
|
|
0
|
|
African Natural Products Database (ANPDB): A resource for exploring the therapeutic potential of natural compounds from Africa.
(academic.oup.com)
|
Betow JY
…
Ntie-Kang F
Nucleic Acids Research
2026-01-06
|
#database
#natural products
#drug discovery
#ethnobotany
#machine learning
|
|
0
|
|
GotEnzymes2: expanding coverage of enzyme kinetics and thermal properties.
(academic.oup.com)
|
Lyu B
…
Li F
Nucleic Acids Research
2026-01-06
|
#protein design
#metabolism
#enzyme kinetics
#database
#modeling
|
|
0
|
|
DisProt in 2026: enhancing intrinsically disordered proteins accessibility, deposition, and annotation.
(academic.oup.com)
|
Nugnes MV
…
Aspromonte MC
Nucleic Acids Research
2026-01-06
|
#proteomics
#database
#annotation
#curation
#bioinformatics
|
|
0
|
|
NapRNAdb: a multispecies repository and analytical platform for napRNA discovery and functional annotation.
(academic.oup.com)
|
Xuan J
…
He QY
Nucleic Acids Research
2026-01-06
|
#ncrna
#transcriptomics
#database
#annotation
#phylogenomics
|
|
0
|
|
TEDD: a comprehensive database for translation efficiency dynamics.
(academic.oup.com)
|
Lei W
…
Chen F
Nucleic Acids Research
2026-01-06
|
#translation
#transcriptomics
#ribosome
#database
#gene expression
|
|
0
|
|
The DO-KB knowledgebase 2026 update: expanding programmatic and language access.
(academic.oup.com)
|
Baron JA
…
Schriml LM
Nucleic Acids Research
2026-01-06
|
#ontology
#knowledge
#classification
#database
|
|
0
|
|
ATACdb 2.0: a comprehensive chromatin accessibility database of human and mouse.
(academic.oup.com)
|
Fang QL
…
Wang QY
Nucleic Acids Research
2026-01-06
|
#chromatin
#accessibility
#transcriptomics
#epigenetics
#database
|
|
0
|
|
FireProtDB 2.0: large-scale manually curated database of the protein stability data.
(academic.oup.com)
|
Musil M
…
Bednar D
Nucleic Acids Research
2026-01-06
|
#proteomics
#protein stability
#database
#mutagenesis
#computational modeling
|
|
0
|
|
SeekPCMdb: knowledge on disease-associated protein-coding mutations.
(academic.oup.com)
|
Yang P
…
Jia P
Nucleic Acids Research
2026-01-06
|
#mutation
#database
#sequencing
#curation
|
|
0
|
|
GENEasso: a curated resource of credible disease-gene associations across complex diseases from GWAS summary statistics.
(academic.oup.com)
|
Jiang T
…
Gu N
Nucleic Acids Research
2026-01-06
|
#gene-association
#transcriptomics
#database
#genome-wide association
|
|
0
|
|
m6AConquer: a consistently quantified and orthogonally validated database for the N6-methyladenosine (m6A) epitranscriptome.
(academic.oup.com)
|
Zhao X
…
Wei Z
Nucleic Acids Research
2026-01-06
|
#epigenomics
#sequencing
#methylation
#database
#qtl
|
|
0
|
|
metaTraits: a large-scale integration of microbial phenotypic trait information.
(academic.oup.com)
|
Podlesny D
…
Bork P
Nucleic Acids Research
2026-01-06
|
#phenotypic
#microbiome
#metagenomics
#database
#genomics
|
|
0
|
|
The antiSMASH database version 5.
(academic.oup.com)
|
Blin K
…
Weber T
Nucleic Acids Research
2026-01-06
|
#genome mining
#biosynthesis
#metabolites
#database
|
|
0
|
|
KnockRBP: an integrated multi-omics database of functional perturbation profiles for RNA-binding proteins.
(academic.oup.com)
|
Yang M
…
Xu Y
Nucleic Acids Research
2026-01-06
|
#rna binding
#transcriptomics
#database
#perturbation
#translation
|
|
0
|
|
SDMap: a comprehensive database of spatial drug perturbation maps.
(academic.oup.com)
|
Li F
…
Xu Y
Nucleic Acids Research
2026-01-06
|
#spatial omics
#pharmacology
#microenvironment
#database
#tissue
|
|
0
|
|
Human-scATAC-Corpus: a comprehensive database of scATAC-seq data.
(academic.oup.com)
|
Chen X
…
Jiang R
Nucleic Acids Research
2026-01-06
|
#single-cell sequencing
#chromatin
#epigenomics
#database
#gene regulation
|
|
0
|
|
NPASS database update 2026: comprehensive quantitative composition, bioactivity, and ADME-Tox data of natural products for biomedical research.
(academic.oup.com)
|
Lin H
…
Zeng X
Nucleic Acids Research
2026-01-06
|
#natural products
#database
#bioactivity
#adme
#toxicity
|
|
0
|
|
proGenomes4: providing 2 million accurately and consistently annotated high-quality prokaryotic genomes.
(academic.oup.com)
|
Fullam A
…
Mende DR
Nucleic Acids Research
2026-01-06
|
#pangenome
#annotation
#prokaryotic
#metagenomics
#database
|
|
0
|
|
TTDB: a comprehensive Transcriptome Turnover Database for exploring mRNA stability.
(academic.oup.com)
|
Jiang H
…
Xie Z
Nucleic Acids Research
2026-01-06
|
#rna
#transcriptomics
#database
#stability
#sequencing
|
|
0
|
|
metagRoot: a comprehensive database of protein families associated with plant root microbiomes.
(academic.oup.com)
|
Chasapi MN
…
Pavlopoulos GA
Nucleic Acids Research
2026-01-06
|
#metagenomics
#microbiome
#proteomics
#metatranscriptomics
#database
|