|
0
|
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Alignoth: portable and interactive visualization of read alignments.
(academic.oup.com)
|
Wiegand F
…
Koster J
Bioinformatics
2026-01-02
|
#sequencing
#visualization
#alignment
|
|
0
|
|
isoSeQL: comparing long-read isoforms across multiple datasets.
(academic.oup.com)
|
Liu CS
…
Chun J
Bioinformatics
2026-01-02
|
#transcriptomics
#sequencing
#clustering
#isoforms
|
|
0
|
|
mm2-ivh: simple and precise overlap detection in alpha satellite HORs with interval hashing.
(academic.oup.com)
|
Suzuki H
…
Shiraishi Y
Bioinformatics
2026-01-02
|
#assembly
#sequencing
#algorithm
|
|
0
|
|
CholeraSeq: a comprehensive genomic pipeline for cholera surveillance and near real-time outbreak investigation.
(academic.oup.com)
|
Tagliamonte MS
…
Wilkinson E
Bioinformatics
2026-01-02
|
#phylogenomics
#assembly
#sequencing
#surveillance
#cholera
|
|
0
|
|
MHASS: Microbiome HiFi Amplicon Sequencing Simulator.
(academic.oup.com)
|
Howard-Stone R
…
Mandoiu II
Bioinformatics
2026-01-02
|
#microbiome
#sequencing
#clustering
#simulation
|
|
0
|
|
BPSS: a Nextflow pipeline for Bacterial Peptide Sequence Selection to detect protein diversity.
(academic.oup.com)
|
Bastien S
…
Vandenesch F
Bioinformatics
2026-01-02
|
#proteomics
#sequencing
#clustering
#variation
|
|
0
|
|
NanoSSL: attention mechanism-based self-supervised learning method for protein identification using nanopores.
(academic.oup.com)
|
Xie Y
…
Dong Z
Bioinformatics
2026-01-02
|
#proteomics
#sequencing
#machine learning
#nanopores
#self-supervised learning
|
|
0
|
|
ViMOP: a user-friendly and field-applicable pipeline for untargeted viral genome nanopore sequencing.
(academic.oup.com)
|
Petersen NP
…
Kafetzopoulou LE
Bioinformatics
2026-01-02
|
#metagenomics
#assembly
#sequencing
#surveillance
#virus
|
|
0
|
|
Analyzing cell-type-specific isoform expression using IsoDiffR and long-read single-cell RNA sequencing.
(academic.oup.com)
|
Chen H
…
Shi ZX
Bioinformatics
2026-01-02
|
#transcriptomics
#gene expression
#sequencing
#single-cell
#isoforms
|
|
0
|
|
Cleanifier: contamination removal from microbial sequences using spaced seeds of a human pangenome index.
(academic.oup.com)
|
Zentgraf J
…
Rahmann S
Bioinformatics
2026-01-02
|
#microbiome
#metagenomics
#sequencing
#contamination
#pangenome
|
|
0
|
|
Troubleshooting common errors in assemblies of long-read metagenomes.
(nature.com)
|
Trigodet F
…
Eren AM
Nature Biotechnology
2026-01-02
|
#microbiome
#metagenomics
#assembly
#sequencing
|
|
0
|
|
Sensitive and unbiased genome-wide profiling of base-editor-induced off-target activity using CHANGE-seq-BE.
(nature.com)
|
Lazzarotto CR
…
Tsai SQ
Nature Biotechnology
2026-01-02
|
#sequencing
#gene therapy
#genotoxicity
#off-target effects
|
|
0
|
|
Global atlas of enhancer-promoter interactome in cotton genome revealed by profiling RNA-RNA spatial interactions.
(link.springer.com)
|
Wen M
…
Wang K
Genome Biology
2026-01-02
|
#transcriptomics
#sequencing
#gene regulation
#polyploidy
|
|
0
|
|
cuteSV-OL: a real-time structural variation detection framework for nanopore sequencing devices.
(academic.oup.com)
|
Guo W
…
Jiang T
Bioinformatics
2026-01-02
|
#nanopore
#sequencing
#structural variation
#calling
|
|
0
|
|
A hybrid unsupervised methodology on artificial intelligence filtering for automatically processing cellular DNA-encoded library (DEL) datasets.
(academic.oup.com)
|
Huang Y
…
Yiu SM
Bioinformatics
2026-01-02
|
#screening
#sequencing
#machine learning
#drug discovery
|