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0
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GRNContext: An Interactive Web Platform for Contextualized Gene Regulatory Networks Visualization Across Human Cancers.
(academic.oup.com)
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Pezoa-Soto I
…
Martin AJM
Bioinformatics
2026-06-13
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#transcriptomics
#cancer
#modeling
#regulation
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0
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spAttClu: A spatial domain clustering model lev-eraging spatially-weighted graph attention and contrastive learning.
(academic.oup.com)
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Zhang T
…
Wang G
Bioinformatics
2026-06-13
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#transcriptomics
#clustering
#heterogeneity
#tissue
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0
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Trans-regulation of heterochromatin underlies genetic variation in 3D genome contacts in mouse embryonic stem cells.
(link.springer.com)
|
Fortin HJ
…
Baker CL
Genome Biology
2026-06-13
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#chromatin
#qtl
#transcriptomics
#genetics
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0
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Genome and transcriptome analyses reveal parallel altitude adaptation in Chenopodium.
(link.springer.com)
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Zhang C
…
Jiao C
Genome Biology
2026-06-13
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#adaptation
#genomics
#transcriptomics
#eqtl
#evolution
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0
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Prevotella bivia promotes cervical cancer progression and modulates macrophage polarization, while Lactobacillus iners suppresses these processes: evidence from multiomics analysis.
(journals.asm.org)
|
Zhang T
…
Han S
mBio
2026-06-15
|
#microbiome
#cancer
#transcriptomics
#metabolomics
#macrophage
|
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0
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Bifidobacteria infantis and human milk oligosaccharides have independent and synergistic effects on immune response and amino acid metabolism in germ-free mouse models.
(journals.asm.org)
|
Mulakala BK
…
Yeruva L
mSystems
2026-06-15
|
#microbiome
#immunity
#metabolism
#transcriptomics
#probiotic
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0
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Zika virus infections of human stem cell-derived cerebral organoids reveal viral lineage-specific pathogenesis responses.
(journals.asm.org)
|
Harding AT
…
Gehrke L
mBio
2026-06-15
|
#neuropathogenesis
#transcriptomics
#viral infection
#immunity
#organoid
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0
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Causal circuit tracing reveals distinct computational architectures in single-cell foundation models: inhibitory dominance, biological coherence, and cross-model convergence.
(academic.oup.com)
|
Kendiukhov I
Bioinformatics
2026-06-15
|
#interpretability
#transcriptomics
#circuit analysis
#autoencoders
#language model
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0
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Single-cell RNA sequencing of terminal ileal biopsies identifies signatures of Crohn's disease pathogenesis.
(nature.com)
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Krzak M
…
Anderson CA
Nature Genetics
2026-06-15
|
#transcriptomics
#crohn's disease
#inflammation
#immunity
#single-cell
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0
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The DBD-alpha4 helix of EWSR1::FLI1 is required for GGAA microsatellite binding that underlies genome regulation in Ewing sarcoma.
(elifesciences.org)
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Bayanjargal A
…
Theisen ER
eLife
2026-06-15
|
#cancer
#transcriptomics
#chromatin
#oncogene
#binding
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0
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A generalizable Hi-C foundation model for chromatin architecture, single-cell and multiomics analysis across species.
(nature.com)
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Wang X
…
Wang S
Nature Methods
2026-06-15
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#chromatin
#modeling
#transcriptomics
#multi-omics
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0
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From diet to function: using synthetic microbial communities to map gut microbial interactions.
(nature.com)
|
Senoo DKJ
…
Hall LJ
npj Biofilms and Microbiomes
2026-06-15
|
#microbiome
#metabolism
#modeling
#transcriptomics
#dysbiosis
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0
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Swine acute diarrhea syndrome coronavirus nsp5 induces apoptosis by targeting GATA zinc finger domain-containing protein 2A (GATAD2A/p66alpha).
(journals.asm.org)
|
Huang H
…
Sun W
mBio
2026-06-15
|
#apoptosis
#proteolysis
#coronavirus
#virulence
#transcriptomics
|
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0
|
|
Telomere-to-telomere genome of Stylosanthes guianensis uncovers symbiotic adaptation to phosphorus-deficient soils.
(link.springer.com)
|
Liu P
…
Chen Z
Genome Biology
2026-06-15
|
#symbiosis
#genomics
#transcriptomics
#metabolism
#adaptation
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0
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|
SECTOR: structural entropy-based learning of spatiotemporal organisation in spatial transcriptomics.
(academic.oup.com)
|
Huang L
…
Chen D
Bioinformatics
2026-06-15
|
#transcriptomics
#clustering
#pseudotime
#modeling
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0
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|
Phylogenetic tree inference from single-cell RNA sequencing data with SCITE-RNA.
(link.springer.com)
|
Zimmermann N
…
Beerenwinkel N
Genome Biology
2026-06-15
|
#phylogenomics
#transcriptomics
#cancer
#clustering
|
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0
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|
Transient Interferon-Driven Natural Killer Cell Activation in Acute Hepatitis C.
(academic.oup.com)
|
Strunz B
…
Bjorkstrom NK
Journal of Infectious Diseases
2026-06-16
|
#immunity
#hepatitis
#transcriptomics
#infection
#inflammation
|
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0
|
|
Targeting the cGAS-STING pathway mitigates Huntington disease pathogenesis in a knock-in mouse model.
(pnas.org)
|
Kesharwani A
…
Subramaniam S
PNAS
2026-06-16
|
#neuroinflammation
#immunity
#transcriptomics
#neurodegeneration
#lipidomics
|
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0
|
|
Disruption to TFEB signaling and autophagy in newly formed oligodendrocytes leads to aberrant generation of CNS myelin.
(pnas.org)
|
Barbosa D
…
Sun LO
PNAS
2026-06-16
|
#autophagy
#myelination
#oligodendrocytes
#transcriptomics
|
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0
|
|
MHC-I Upregulation and Increased Glucose Dependence Define Innate Antifungal Immune Responses to Cryptococcus neoformans.
(academic.oup.com)
|
Nair AS
…
Wozniak KL
Journal of Infectious Diseases
2026-06-16
|
#immunity
#infection
#metabolism
#transcriptomics
#macrophage
|