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22
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|
gutDBase: a comprehensive database for uncovering heterogeneous molecular characteristics of 15 gut-related diseases.
(academic.oup.com)
|
He G
…
Cheng L
Nucleic Acids Research
2026-11-06
|
#microbiome
#transcriptomics
#database
#gastrointestinal
#heterogeneity
|
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22
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|
PmiREN3.0: a multi-omics integrated and AI-assisted encyclopedia for plant microRNA research.
(academic.oup.com)
|
Zhang C
…
Yang X
Nucleic Acids Research
2026-11-06
|
#microrna
#transcriptomics
#plants
#database
#ai
|
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19
|
|
An information-theoretic framework for inferring T cell dynamics from single-cell RNA and T cell receptor sequencing.
(nature.com)
|
Ceglia N
…
Greenbaum BD
Nature Genetics
2026-11-05
|
#single-cell
#tcr
#transcriptomics
#immunotherapy
#bayesian
|
|
19
|
|
Multiscale multimodal integration of spatial omics through a deep generative model with CORAL.
(nature.com)
|
He S
…
Zou J
Nature Genetics
2026-11-05
|
#spatial omics
#transcriptomics
#integration
#proteomics
#hepatocellular carcinoma
|
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18
|
|
Single-cell atlas uncovers layer 4 heterogeneity and functional gradients in rhesus macaque visual cortex.
(nature.com)
|
Gunther DM
…
Khodosevich K
Nature Communications
2026-11-05
|
#transcriptomics
#neuron
#atlas
#cortex
#heterogeneity
|
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18
|
|
A transcriptional and cellular exploration of obesity and type II diabetes in human adipose tissues.
(science.org)
|
Trim WV
…
Lynch L
Science Advances
2026-11-06
|
#transcriptomics
#diabetes
#obesity
#immunology
#adipose
|
|
18
|
|
Combating drug-resistant Aeromonas veronii: Multiomics revealed the antibacterial mechanism of resveratrol.
(science.org)
|
Ouyang P
…
Chen D
Science Advances
2026-11-06
|
#amr
#metabolomics
#transcriptomics
#virulence
|
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16
|
|
YEASTRACT+: the 2026 update with focus on global quantitative transcription regulation data and metabolic engineering applications.
(academic.oup.com)
|
Coutinho L
…
Monteiro PT
Nucleic Acids Research
2026-11-05
|
#transcriptomics
#yeast
#transcription
#metabolic-engineering
#database
|
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16
|
|
LncRNAfunc 2.0: an evidence-integrated knowledgebase for regulatory and functional interpretation of lncRNAs in cancer.
(academic.oup.com)
|
Yang M
…
Xu Y
Nucleic Acids Research
2026-11-05
|
#cancer
#ncrna
#transcriptomics
#regulation
#knowledgebase
|
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16
|
|
scSpAS: an integrated single-cell and spatial atlas of transcript isoform regulation.
(academic.oup.com)
|
Chen L
Nucleic Acids Research
2026-11-05
|
#transcriptomics
#splicing
#isoforms
#single-cell
|
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16
|
|
iGPSC-DB: a comprehensive database for an inferred single-cell genetic perturbation atlas.
(academic.oup.com)
|
Wang P
…
Li F
Nucleic Acids Research
2026-11-05
|
#transcriptomics
#cancer
#single-cell
#perturbation
#microenvironment
|
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14
|
|
Hidden diversity from transposable element RNAs in cancer.
(linkinghub.elsevier.com)
|
Chen M
…
Faulkner GJ
Molecular Cell
2026-11-05
|
#transcriptomics
#cancer
#transposon
#noncoding-rna
|
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12
|
|
TNF- and IL-1-induced inflammation are enhanced through cooperative interactions between Nrf2 and NF-kappaB.
(linkinghub.elsevier.com)
|
Costigan A
…
Martin SJ
Cell Reports
2026-11-06
|
#inflammation
#immunity
#oxidative stress
#transcriptomics
|
|
12
|
|
Succinate promotes multiple myeloma cell proliferation through TCA cycle oxidation.
(linkinghub.elsevier.com)
|
Gudgeon N
…
Dimeloe S
Cell Reports
2026-11-06
|
#myeloma
#metabolism
#mitochondria
#transcriptomics
#proliferation
|
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12
|
|
Terminus est: Repurposing public RNA-seq data to map 3' transcript termini in bacteria.
(linkinghub.elsevier.com)
|
Barquist L
Cell Reports
2026-11-06
|
#transcriptomics
#sequencing
#termination
|
|
11
|
|
Cellular senescence mediates facioscapulohumeral muscular dystrophy.
(jci.org)
|
Jung U
…
Bosnakovski D
Journal of Clinical Investigation
2026-11-05
|
#muscular dystrophy
#senescence
#transcriptomics
#inflammation
#fibrosis
|
|
9
|
|
DeSCENT: Deconvolutional Single-Cell RNA-seq Enhances Transcriptome-based Cancer Survival Analysis.
(academic.oup.com)
|
Zhao Y
…
He Y
Bioinformatics
2026-11-06
|
#transcriptomics
#cancer
#survival
#deconvolution
#heterogeneity
|
|
7
|
|
Functional involvement of AMPK in Lumpy skin disease virus replication and associated cellular stress responses.
(tandfonline.com)
|
Zhong L
…
Xue F
Virulence
2026-11-06
|
#stress
#virus
#metabolism
#transcriptomics
#mitochondrial
|
|
6
|
|
scPhyloGRN: gene regulatory network inference guided by lineage topology in single-cell developmental data.
(academic.oup.com)
|
Meng R
…
Zhou D
Bioinformatics
2026-11-05
|
#transcriptomics
#single-cell
#gene regulation
#phylogenetics
|
|
6
|
|
Raman spectra identify vancomycin-resistant phenotypes and their transcriptomic features in Staphylococcus aureus.
(journals.asm.org)
|
Kamei K-iF
…
Wakamoto Y
mBio
2026-11-05
|
#amr
#transcriptomics
#spectroscopy
#phenotyping
|