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1
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Large-scale single-cell long-read genomics enables high-resolution microbiome profiling
(biorxiv.org)
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Mengzhen Li
…
Yifan Liu
openRxiv
2024-9-11
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#microbiome
#long-read
#single-cell
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0
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Single-cell RNA sequencing of terminal ileal biopsies identifies signatures of Crohn's disease pathogenesis.
(nature.com)
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Krzak M
…
Anderson CA
Nature Genetics
2026-06-15
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#transcriptomics
#crohn's disease
#inflammation
#immunity
#single-cell
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0
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Decoding common and rare noncoding variant effects across cellular and developmental contexts.
(nature.com)
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Marderstein AR
…
Montgomery SB
Nature Genetics
2026-06-15
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#chromatin
#deep learning
#variant interpretation
#regulatory variants
#single-cell
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0
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Lung mucosal and systemic responses at single-cell resolution in an aerosolized Mycobacterium bovis BCG human challenge model.
(linkinghub.elsevier.com)
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Li S
…
McShane H
Cell Reports Medicine
2026-06-16
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#immunity
#single-cell
#transcriptomics
#tb
#vaccination
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0
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Modeling chimeric antigen receptor response at the single-cell level with conditional optimal transport.
(linkinghub.elsevier.com)
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Driessen A
…
Rapsomaniki M
Cell Systems
2026-06-17
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#modeling
#immunotherapy
#single-cell
#cancer
#transcriptomics
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0
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Lamprey 3D single-cell transcriptomics reveals ancestral and specialized features of the vertebrate brain.
(science.org)
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Wu H
…
Su B
Science
2026-06-18
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#transcriptomics
#evolution
#brain
#single-cell
#comparative
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0
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ChatMDV: Reducing Technical Barriers in Bioinformatics Analysis using Large Language Models.
(academic.oup.com)
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Kiourlappou M
…
Taylor S
GigaScience
2026-06-19
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#transcriptomics
#visualization
#single-cell
#bioinformatics
#automation
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0
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VeloRM: disentangling pre- and post-splicing RNA modification dynamics at single-cell resolution.
(academic.oup.com)
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Wang H
…
Meng J
Nucleic Acids Research
2026-06-22
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#epigenomics
#single-cell
#rna modification
#splicing
#trajectory
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0
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Longitudinal changes in DNA methylation in IDH-mutant glioma fuel disease progression through altered cell state differentiation.
(nature.com)
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Nomura M
…
Suva ML
Nature Genetics
2026-06-22
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#methylation
#glioma
#transcriptomics
#differentiation
#single-cell
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0
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From the Brain Cell Atlas to Precision Neurology: A review of the application of AI-driven multi-omics in brain science.
(academic.oup.com)
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He Y
…
Wang L
GigaScience
2026-06-23
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#multi-omics
#neurodegeneration
#single-cell
#biomarker
#ai
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0
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Quantitative cytokine profiling of primary human macrophages reveals distinct single-cell modes of trained immunity.
(linkinghub.elsevier.com)
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O'Farrell A
…
Raj A
Cell Systems
2026-06-23
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#trained immunity
#macrophage
#single-cell
#transcriptomics
#immunity
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0
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Single-cell detection and quantification of the microbiota by MicFLY.
(linkinghub.elsevier.com)
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Tin CM
…
Hand TW
Cell Host & Microbe
2026-06-23
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#microbiome
#single-cell
#cytometry
#immunity
#enterocolitis
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0
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Regulatory logic underlying neural crest contributions to the head versus the heart.
(pnas.org)
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Gandhi S
…
Bronner ME
PNAS
2026-06-23
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#transcriptomics
#chromatin
#developmental biology
#gene regulation
#single-cell
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0
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Collagen-producing eye cell atlas reveals distinct fibroblast fates in early injury vs. fibrotic subretinal disease.
(pnas.org)
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Ozaki E
…
Doyle SL
PNAS
2026-06-26
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#fibrosis
#fibroblast
#single-cell
#macular degeneration
#extracellular matrix
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0
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A longitudinal single-nucleus transcriptomic atlas of bovine placentation reveals dynamic cellular hierarchies and regulatory programs.
(link.springer.com)
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Tan G
…
Zheng Y
Genome Biology
2026-06-27
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#transcriptomics
#placentation
#single-cell
#trophoblast
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0
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A unified analysis of cell type- and trajectory-associated pathways in single-cell data using Phoenix.
(genome.cshlp.org)
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Halperin Y
…
Rabani M
Genome Research
2026-06-29
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#transcriptomics
#pathway analysis
#single-cell
#differentiation
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0
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Spatio-DARLIN enables robust and efficient in situ lineage tracing in mice at single-cell resolution.
(nature.com)
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Gao J
…
Li L
Nature Methods
2026-06-29
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#lineage tracing
#spatial-transcriptomics
#single-cell
#clonal-analysis
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0
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CSCN: Inference of Cell-Specific Causal Networks Using Single-Cell RNA-Seq Data.
(academic.oup.com)
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Wang M
…
Chen J
Bioinformatics
2026-06-30
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#transcriptomics
#causal inference
#single-cell
#gene regulation
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0
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Lineage tracing from cellular heritage to disease destiny.
(nature.com)
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Zhu H
…
Zhou B
Nature Genetics
2026-06-30
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#lineage tracing
#single-cell
#cancer
#barcoding
#multi-omics
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0
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Benchmarking AI scientists for omics data-driven biological discovery.
(academic.oup.com)
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Luo E
…
Zhang X
Bioinformatics
2026-07-01
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#transcriptomics
#ai
#benchmark
#single-cell
#annotation
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