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21
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|
Mapping transcriptional responses to cellular perturbations with RNA fingerprinting.
(linkinghub.elsevier.com)
|
Grabski IN
…
Satija R
Cell
2026-10-09
|
#transcriptomics
#single-cell
#drug response
#immunology
|
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12
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|
Single-cell analyses of global cohorts outline determinants of immune aging and link the ratio of GZMK(+) to GZMB(+) Tem cells to health trajectories.
(linkinghub.elsevier.com)
|
Terekhova M
…
Artyomov MN
Immunity
2026-10-09
|
#single-cell
#immunoaging
#inflammaging
#cd8 t cells
#proteomics
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9
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|
A spatiotemporal lifecycle atlas decodes spatial coordination in rice.
(linkinghub.elsevier.com)
|
Jing Y
…
Chen F
Cell
2026-10-06
|
#transcriptomics
#single-cell
#plants
#spatiotemporal
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7
|
|
Standardizing Cell Ontology terms for cross-study integration in the female reproductive tract.
(science.org)
|
Ong HT
…
Laronda MM
Science Advances
2026-10-09
|
#transcriptomics
#reproduction
#single-cell
#ontology
#annotation
|
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4
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|
Diverse infections transcriptionally reprogram the intestinal epithelium and epithelial-immune cell interactions.
(nature.com)
|
Hart A
…
Beiting DP
Nature Immunology
2026-10-07
|
#infection
#transcriptomics
#single-cell
#immunity
#epithelium
|
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4
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|
Protein large language model-assisted one-to-one gene homology mapping in cross-species single-cell transcriptome integration.
(genome.cshlp.org)
|
Kuang ZY
…
Wu HJ
Genome Research
2026-10-09
|
#transcriptomics
#single-cell
#homology
#integration
#comparative
|
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3
|
|
Decoding epithelial-mesenchymal transitions with multi-omics.
(nature.com)
|
Narwade N
…
Nieto MA
Nature Reviews Genetics
2026-10-05
|
#epithelial-mesenchymal transition
#multi-omics
#single-cell
#machine learning
#fibrosis
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2
|
|
Single-cell study of human ovarian response to phthalate exposure reveals glial cell susceptibility and disruption of adhesion and mitochondrial pathways.
(linkinghub.elsevier.com)
|
Panagiotou EM
…
Damdimopoulou P
EBioMedicine
2026-10-06
|
#toxicology
#transcriptomics
#single-cell
#reproductive
#mitochondrial
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2
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|
Error correction algorithms for efficient gene expression quantification in single cell transcriptomics with Arcane.
(genome.cshlp.org)
|
Zentgraf J
…
Rahmann S
Genome Research
2026-10-07
|
#transcriptomics
#sequencing
#single-cell
#error-correction
#quantification
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1
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|
CardamomOT: A mechanistic optimal transport-based framework for gene regulatory network inference, trajectory reconstruction and generative modeling.
(journals.plos.org)
|
Mauge Y
…
Ventre E
PLOS Computational Biology
2026-10-06
|
#transcriptomics
#gene regulation
#single-cell
#differentiation
#inference
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1
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|
Multiscale Transcriptomic Network Models of Parkinson's Disease at the Single Cell Level.
(academic.oup.com)
|
Chu L
…
Zhang B
GigaScience
2026-10-06
|
#neurodegeneration
#transcriptomics
#single-cell
#gene regulation
#networks
|
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1
|
|
CytoVI: deep generative modeling of antibody-based single cell data.
(nature.com)
|
Ingelfinger F
…
Yosef N
Nature Methods
2026-09-30
|
#single-cell
#immunophenotyping
#cytometry
#lymphoma
#generative_models
|
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1
|
|
Multi-omics-driven personalized management of advanced HCC.
(linkinghub.elsevier.com)
|
Sheng J
…
Liang T
Cell Reports Medicine
2026-10-02
|
#hepatocellular carcinoma
#proteomics
#transcriptomics
#immunotherapy
#single-cell
|
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1
|
|
ArchMap is a web-based platform for reference-based analysis of single-cell datasets.
(nature.com)
|
Lotfollahi M
…
Theis FJ
Nature Genetics
2026-09-30
|
#single-cell
#transcriptomics
#annotation
#atlases
|
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1
|
|
Single-cell profiling and genetic regulation of alternative polyadenylation in the human brain.
(nature.com)
|
Nan J
…
Xiong X
Nature Genetics
2026-09-30
|
#transcriptomics
#single-cell
#polyadenylation
#neurodegeneration
#qtl
|
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1
|
|
SingPro 2.0: a proteomics-centric knowledge base for single-cell multimodal profiling.
(academic.oup.com)
|
Zhou Y
…
Zhu F
Nucleic Acids Research
2026-09-30
|
#proteomics
#single-cell
#multimodal
#transcriptomics
#heterogeneity
|
|
1
|
|
Quantifying distribution shifts in single-cell data with scXMatch.
(academic.oup.com)
|
Moller A
…
Blumenthal DB
Bioinformatics
2026-10-03
|
#single-cell
#statistics
#transcriptomics
#chromatin
|
|
0
|
|
Systematic transcriptomic evaluation of blastoid models of early human development.
(linkinghub.elsevier.com)
|
Long S
…
Yang P
Cell Systems
2026-10-02
|
#transcriptomics
#single-cell
#differentiation
#stem-cells
|
|
0
|
|
Collapse of embryonic identities and emergence of functional diversity during motor neuron maturation.
(linkinghub.elsevier.com)
|
Chen Y
…
Patel T
Cell Reports
2026-09-30
|
#transcriptomics
#motor neuron
#single-cell
#neurogenesis
#maturation
|
|
0
|
|
RAGCell: Retrieval-Augmented Generation as Supervision for Versatile Single-cell Analysis.
(academic.oup.com)
|
Liu T
…
Zheng Y
Bioinformatics
2026-10-01
|
#single-cell
#machine learning
#transcriptomics
#foundation-models
|