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1
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Large-scale single-cell long-read genomics enables high-resolution microbiome profiling
(biorxiv.org)
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Mengzhen Li
…
Yifan Liu
openRxiv
2024-9-11
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#microbiome
#long-read
#single-cell
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0
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A unified analysis of cell type- and trajectory-associated pathways in single-cell data using Phoenix.
(genome.cshlp.org)
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Halperin Y
…
Rabani M
Genome Research
2026-06-29
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#transcriptomics
#pathway analysis
#single-cell
#differentiation
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0
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Spatio-DARLIN enables robust and efficient in situ lineage tracing in mice at single-cell resolution.
(nature.com)
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Gao J
…
Li L
Nature Methods
2026-06-29
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#lineage tracing
#spatial-transcriptomics
#single-cell
#clonal-analysis
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0
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CSCN: Inference of Cell-Specific Causal Networks Using Single-Cell RNA-Seq Data.
(academic.oup.com)
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Wang M
…
Chen J
Bioinformatics
2026-06-30
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#transcriptomics
#causal inference
#single-cell
#gene regulation
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0
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Lineage tracing from cellular heritage to disease destiny.
(nature.com)
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Zhu H
…
Zhou B
Nature Genetics
2026-06-30
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#lineage tracing
#single-cell
#cancer
#barcoding
#multi-omics
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0
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Benchmarking AI scientists for omics data-driven biological discovery.
(academic.oup.com)
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Luo E
…
Zhang X
Bioinformatics
2026-07-01
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#transcriptomics
#ai
#benchmark
#single-cell
#annotation
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0
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PertAdapt: unlocking single-cell foundation models for genetic perturbation prediction via condition-sensitive adaptation.
(academic.oup.com)
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Bai D
…
Xing EP
Bioinformatics
2026-07-01
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#transcriptomics
#perturbation
#single-cell
#knockouts
#machine learning
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0
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Amaranth: enhanced single-cell transcript assembly via discriminative modelling of UMI reads and internal reads.
(academic.oup.com)
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Zang XC
…
Shao M
Bioinformatics
2026-07-01
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#transcriptomics
#assembly
#single-cell
#isoforms
#sequencing
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0
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LAML-Pro: joint maximum likelihood inference of cell genotypes and cell lineage trees.
(academic.oup.com)
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Chu G
…
Raphael BJ
Bioinformatics
2026-07-01
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#phylogenetics
#lineage
#single-cell
#genome editing
#inference
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0
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Connecting single-cell transcriptomes to projectomes in the mouse visual cortex.
(nature.com)
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Sorensen SA
…
Zeng H
Nature
2026-07-01
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#transcriptomics
#single-cell
#neuronal
#morphology
#classification
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0
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A genome-scale CRISPRi perturbation atlas of human induced pluripotent stem cells.
(nature.com)
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Nourreddine S
…
Mali P
Nature Biotechnology
2026-07-01
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#crispri
#pluripotency
#single-cell
#perturbation
#transcriptomics
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0
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Single-Cell Division Triggers Immediate Efflux Phenotypic Switching to Environmental Toxins in Escherichia coli.
(sfamjournals.onlinelibrary.wiley.com)
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Jin X
…
Guo X
Environmental Microbiology
2026-07-01
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#phenotypic heterogeneity
#efflux-pumps
#single-cell
#toxin-resistance
#adaptation
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0
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TopoMetry systematically learns and evaluates the latent geometry of single-cell data.
(elifesciences.org)
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Sidarta-Oliveira D
…
Velloso LA
eLife
2026-07-03
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#transcriptomics
#single-cell
#clustering
#visualization
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0
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PLNFGL: Joint Estimation of Multi-Condition Gene Networks from Single-cell RNA-seq Data.
(academic.oup.com)
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Zhai W
…
Ji J
Bioinformatics
2026-07-03
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#transcriptomics
#single-cell
#networks
#neurodegeneration
#cancer
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0
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scGenoByte: a GenoByte embedding transformer with biological priors for cell type annotation.
(academic.oup.com)
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Yao J
…
Wu S
Briefings in Bioinformatics
2026-07-03
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#transcriptomics
#single-cell
#cell annotation
#representation learning
#pathway analysis
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0
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scImmuneCo: a compendium of cell-type-specific functional modules for decoding immune responses from single-cell RNA-seq data.
(academic.oup.com)
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Wang FQ
…
Yang W
Briefings in Bioinformatics
2026-07-03
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#transcriptomics
#immunity
#single-cell
#co-expression
#interferon
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0
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A coma pattern-based autofocusing method resolves bacterial cold shock response at single-cell level.
(elifesciences.org)
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Li S
…
Huang S
eLife
2026-07-06
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#microscopy
#single-cell
#stress response
#autofocus
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0
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SenFlag gene signature identifies senescent cells in mouse and human tissues through a conserved core transcriptional program.
(link.springer.com)
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Altulea A
…
Demaria M
The EMBO Journal
2026-07-06
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#senescence
#transcriptomics
#single-cell
#aging
#biomarker
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0
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Molecular profiling of the single-cell proteome via gel electrophoresis and 3D single-molecule imaging.
(nature.com)
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Kamarulzaman L
…
Taniguchi Y
Nature Communications
2026-07-08
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#proteomics
#single-cell
#imaging
#differentiation
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0
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Cellular heterogeneity of hepatic granuloma formation and evolution in murine schistosomiasis japonica.
(nature.com)
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Wu J
…
Xu X
Nature Communications
2026-07-08
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#schistosomiasis
#granuloma
#single-cell
#neutrophil
#fibrosis
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