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1
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From trees to graphs: rethinking phylogeny in microbiome prediction.
(journals.asm.org)
|
Yu Q
…
Liu Y-X
Applied and Environmental Microbiology
2026-09-01
|
#microbiome
#phylogeny
#prediction
#metagenomics
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6
|
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An early-life window of opportunity opened by hyocholic acids.
(linkinghub.elsevier.com)
|
Tessier MEM
…
Preidis GA
Cell Metabolism
2026-09-01
|
#microbiome
#immunity
#colonization
#metabolism
|
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3
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Bacteroides cellulosilyticus-derived 2-hydroxyphenylacetic acid rectifies hepatic lipid homeostasis in MASLD by targeting the PPARgamma-CD36 axis.
(tandfonline.com)
|
Chen K
…
Li S
Gut Microbes
2026-09-01
|
#microbiome
#metabolomics
#steatosis
#metagenomics
#lipidomics
|
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2
|
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Mother-infant sharing of gut and vaginal microbes at the species and strain level.
(linkinghub.elsevier.com)
|
Mueller NT
…
Comstock SS
Cell Reports
2026-09-01
|
#microbiome
#metagenomics
#transmission
#infancy
#delivery
|
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2
|
|
Menopause and "leaky gut": implications for midlife women's health.
(jci.org)
|
Peters BA
Journal of Clinical Investigation
2026-09-01
|
#menopause
#immunity
#microbiome
#barrier
#estrogen
|
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1
|
|
Global and local trajectories of infant gut microbiota development in Bangladesh across the COVID-19 pandemic.
(journals.asm.org)
|
Papadaki MI
…
Matthijnssens J
mSystems
2026-09-01
|
#microbiome
#metagenomics
#infancy
#dysbiosis
|
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1
|
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Multi-kingdom gut microbiota analyses identify biomarkers of different types of pediatric short bowel syndrome.
(journals.asm.org)
|
Wu Q-Q
…
Wang Y
mSystems
2026-09-01
|
#microbiome
#metagenomics
#biomarker
#pediatric
#malabsorption
|
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3
|
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Maternal secretor status and human milk oligosaccharides influence the infant gut resistome.
(linkinghub.elsevier.com)
|
Samarra A
…
Collado MC
Cell Reports Medicine
2026-09-01
|
#amr
#metagenomics
#microbiome
#breastfeeding
|
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4
|
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Unraveling the drug resistance web in IBD: The gut microbiota-immunity-epigenetics axis.
(tandfonline.com)
|
Li Q
…
Zhang F
Gut Microbes
2026-09-01
|
#microbiome
#amr
#ibd
#immunity
#epigenetics
|
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1
|
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Vaginal microbe-binding antibody interactions with a Lactobacillus crispatus live biotherapeutic following treatment for bacterial vaginosis.
(journals.asm.org)
|
Liu R
…
Kaul R
Microbiology Spectrum
2026-09-01
|
#microbiome
#immunity
#bacterial vaginosis
#probiotic
|
|
7
|
|
Antifungal therapy improves microbiome dynamics in inflammatory bowel disease.
(nature.com)
|
Pan X
…
Iliev ID
Nature Medicine
2026-09-01
|
#microbiome
#mycobiota
#ibd
#dysbiosis
#antifungal
|
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1
|
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Induced Dysbiosis Modifies Physiological Responses to Warming in a Temperate Sponge.
(sfamjournals.onlinelibrary.wiley.com)
|
Broadribb M
…
Bell JJ
Environmental Microbiology
2026-09-01
|
#microbiome
#dysbiosis
#symbiosis
#metagenomics
#stress
|
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2
|
|
Indole-AhR signaling shapes emotional regulation.
(linkinghub.elsevier.com)
|
Kim M
…
Vuong HE
Cell Reports
2026-09-01
|
#microbiome
#gut-brain axis
#anxiety
#ibs
#signaling
|
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2
|
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Benchmarking methods for extracting microbial signal from host-dominated metatranscriptomes.
(academic.oup.com)
|
Colajanni A
…
Thebault P
Briefings in Bioinformatics
2026-09-01
|
#metatranscriptomics
#microbiome
#sequencing
#taxonomy
#classification
|
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2
|
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Interpretable deep neural network identifies robust biomarkers for diseases with mechanistic insights from omics data.
(academic.oup.com)
|
Hu X
…
Jiang H
Briefings in Bioinformatics
2026-09-01
|
#deep learning
#biomarker
#transcriptomics
#interpretability
#microbiome
|
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7
|
|
B there for baby: How B12 and Bifidobacterium shape healthy beginnings.
(linkinghub.elsevier.com)
|
Richie TG
…
Cowardin CA
Cell Metabolism
2026-09-01
|
#microbiome
#metabolism
#pregnancy
#obesity
|
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4
|
|
MetaCAT enables reconstruction of high-quality microbial genomes and their association with host traits from metagenomic data.
(nature.com)
|
Liu CC
…
Yang TL
Nature Microbiology
2026-09-01
|
#microbiome
#metagenomics
#genome assembly
#association studies
#cancer
|
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2
|
|
AResKGLM: a graph-grounded language-model framework for interpretable multi-hop antimicrobial resistance reasoning.
(academic.oup.com)
|
Ren J
…
Tat Alexander Ng M
Briefings in Bioinformatics
2026-09-01
|
#amr
#language model
#knowledge graph
#interpretability
#microbiome
|
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9
|
|
Oxygen-responsive bacterial glycosphingolipid links symbiont fitness and immune development in neonatal host.
(linkinghub.elsevier.com)
|
Heo K
…
Oh SF
Cell
2026-09-01
|
#microbiome
#immunology
#symbiosis
#metabolism
|