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0
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CellTypeAI: cell annotation for scRNA-seq using local generative-AI.
(academic.oup.com)
|
Daw RH
…
Grainger JR
Bioinformatics
2026-08-01
|
#transcriptomics
#cell annotation
#single-cell
#machine learning
|
|
0
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Asymmetric chromatin accessibility underlies anterior-posterior axis specification in moth fly embryos.
(journals.plos.org)
|
Amiri EE
…
Schmidt-Ott U
PLOS Biology
2026-08-01
|
#embryogenesis
#chromatin
#transcriptomics
|
|
0
|
|
The genome, transcriptome and metabolome of Aspergillus welwitschiae Ocstreb1 from wild halophytic rice, Oryza coarctata, indicates its distinctiveness.
(microbiologyresearch.org)
|
Tamanna N
…
Seraj ZI
Microbial Genomics
2026-08-01
|
#endophyte
#genomics
#transcriptomics
#metabolomics
#halotolerance
|
|
0
|
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Discovering reference-missing cell types in bulk transcriptomics.
(academic.oup.com)
|
Fan Y
…
Li Y
Bioinformatics
2026-08-01
|
#transcriptomics
#deconvolution
#cell-type
#computational
#cancer
|
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0
|
|
Sensitivity analysis of cell fate trajectories from single-cell transcriptomics.
(academic.oup.com)
|
Noman AA
…
Sashittal P
Bioinformatics
2026-08-01
|
#transcriptomics
#differentiation
#trajectories
#gene regulation
#computational biology
|
|
0
|
|
scTimeBench: a streamlined benchmarking platform for single-cell time-series analysis.
(academic.oup.com)
|
Osakwe A
…
Li Y
Bioinformatics
2026-08-01
|
#transcriptomics
#single-cell
#trajectory
#benchmarking
#temporal
|
|
0
|
|
A novel female reproductive organ differentiates insemination and postmating responses in bedbugs.
(academic.oup.com)
|
Martens BM
…
Garlovsky MD
Molecular Biology and Evolution
2026-08-01
|
#reproduction
#immunity
#insect
#transcriptomics
|
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0
|
|
SlotDeconv: spatial transcriptomics deconvolution via diversity-constrained prototype learning and spatial refinement.
(academic.oup.com)
|
Fang H
…
Wei Z
Bioinformatics
2026-08-01
|
#transcriptomics
#deconvolution
#cell typing
|
|
0
|
|
IBAS: Interaction-bridged association studies discovering novel genes underlying complex traits.
(journals.plos.org)
|
Wang D
…
Zhang Q
PLOS Computational Biology
2026-08-01
|
#genome-wide association
#transcriptomics
#epistasis
#association
#pathway
|
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0
|
|
ScanNet: Single-cell annotation informed by transcriptional regulation Network via iterative heterogeneous graph learning.
(journals.plos.org)
|
Long Y
…
Wang Y
PLOS Computational Biology
2026-08-01
|
#transcriptomics
#single-cell
#annotation
#regulatory-networks
#machine learning
|
|
0
|
|
Single-Cell Profiling Identifies Skin-Resident Memory CD4(+) T Cells as a Potential Correlate of Immunity During Staphylococcus aureus Skin Infection.
(onlinelibrary.wiley.com)
|
Clegg J
…
Soldaini E
European Journal of Immunology
2026-08-01
|
#immunity
#infection
#transcriptomics
#memory
#vaccination
|
|
0
|
|
Metabolic and developmental rate divergence between serially homologous cells underlies an evolutionary innovation in Drosophila.
(journals.plos.org)
|
Hopkins BR
…
Kopp A
PLOS Biology
2026-08-01
|
#transcriptomics
#evolution
#differentiation
|
|
0
|
|
Network-based stratification of allele-specific expression reveals patient subgroups in Huntington's disease.
(academic.oup.com)
|
van Beek D
…
Kutmon M
Bioinformatics
2026-08-01
|
#allelic expression
#neurodegeneration
#patient-stratification
#transcriptomics
#neuroinflammation
|
|
0
|
|
SPIDER: spatially integrated denoising via embedding regularization with single cell supervision.
(academic.oup.com)
|
Ansari MI
…
Zhang W
Bioinformatics
2026-08-01
|
#transcriptomics
#denoising
#integration
#embedding
|
|
0
|
|
Engineering inter-kingdom adrenergic signaling in commensals couples host stress hormone sensing to programmable biological outputs.
(journals.plos.org)
|
Srivastava SK
…
Chang MW
PLOS Biology
2026-08-01
|
#synthetic biology
#signal transduction
#microbiome
#transcriptomics
#stress response
|
|
0
|
|
The ADAP-TRIM21-ZEB2 axis regulates CD8(+) T cell effector expansion and central memory-like differentiation.
(linkinghub.elsevier.com)
|
Lu J
…
Liu H
iScience
2026-08-01
|
#immunity
#differentiation
#transcriptomics
#signaling
|
|
0
|
|
Intratumoural plasma cells mediate a pro-inflammatory response to kinase inhibition and successful immune checkpoint blockade therapy in malignant peripheral nerve sheath tumours.
(linkinghub.elsevier.com)
|
Lingo JJ
…
Quelle DE
EBioMedicine
2026-08-01
|
#immunotherapy
#sarcoma
#transcriptomics
#checkpoint
#kinase-inhibitors
|
|
0
|
|
Heme acts as a metabolic brake on erebosis in the Drosophila gut.
(journals.plos.org)
|
Morikawa M
…
Yoo SK
PLOS Biology
2026-08-01
|
#erebosis
#metabolism
#homeostasis
#intestinal
#transcriptomics
|
|
0
|
|
An end-to-end computational framework for "Record-seq" transcriptional recording data.
(academic.oup.com)
|
Hugi F
…
Platt RJ
Bioinformatics
2026-08-01
|
#transcriptomics
#crispr
#sequencing
#computational
#prokaryotic
|
|
0
|
|
ARCADIA reveals spatially dependent transcriptional programs through integration of scRNA-seq and spatial proteomics.
(academic.oup.com)
|
Rozenman B
…
Azizi E
Bioinformatics
2026-08-01
|
#transcriptomics
#proteomics
#integration
#single-cell sequencing
|
|
0
|
|
ExoShorkie: predicting RNA-seq coverage of exogenous genomes in yeast by transfer learning.
(academic.oup.com)
|
Mandl J
…
Orenstein Y
Bioinformatics
2026-08-01
|
#transcriptomics
#machine learning
#prediction
#regulation
|
|
0
|
|
DESpace2: detection of differential spatial patterns in spatial omics data.
(academic.oup.com)
|
Cai P
…
Tiberi S
Bioinformatics
2026-08-01
|
#transcriptomics
#differential expression
#omics
|