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0
|
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Pretreatment Resistance to Integrase Inhibitors in the Swiss HIV Cohort Study From 1995 to 2025.
(academic.oup.com)
|
Loosli T
…
Kouyos RD
Open Forum Infectious Diseases
2026-08-01
|
#amr
#hiv
#sequencing
|
|
0
|
|
Skuas as sentinels of high pathogenicity avian influenza H5N1 on the Antarctic Peninsula in the 2024/2025 austral summer.
(microbiologyresearch.org)
|
Wille M
…
Dewar M
Microbial Genomics
2026-08-01
|
#influenza
#surveillance
#avian
#virology
#sequencing
|
|
0
|
|
Metagenomic Insights Into Red Sea Biodiversity Across the Web of Life.
(sfamjournals.onlinelibrary.wiley.com)
|
Laiolo E
…
Duarte CM
Environmental Microbiology
2026-08-01
|
#metagenomics
#microbiome
#biodiversity
#sequencing
#marine
|
|
0
|
|
Genomic diversity of Pseudomonas aeruginosa causing bacteremic pneumonia in an intensive care unit, with emergence of an OXA-796-producing NDM-1 ST773 isolate.
(microbiologyresearch.org)
|
Lee K
…
Sung H
Microbial Genomics
2026-08-01
|
#sequencing
#amr
#pneumonia
#genomics
#infection
|
|
0
|
|
Rising Incidence of New Delhi Metallo-beta-Lactamase-Producing Carbapenem-Resistant Enterobacterales, 10 US Sites, 2018-2023.
(academic.oup.com)
|
Duffy N
…
Guh AY
Open Forum Infectious Diseases
2026-08-01
|
#amr
#enterobacterales
#epidemiology
#sequencing
|
|
0
|
|
Bacterial Carriage and Invasive Infections Among People Who Inject Drugs: Clinical and Molecular Epidemiology in an Australian Prospective Cohort.
(academic.oup.com)
|
Attwood LO
…
Stewardson AJ
Open Forum Infectious Diseases
2026-08-01
|
#carriage
#epidemiology
#sequencing
#infection
#amr
|
|
0
|
|
An end-to-end computational framework for "Record-seq" transcriptional recording data.
(academic.oup.com)
|
Hugi F
…
Platt RJ
Bioinformatics
2026-08-01
|
#transcriptomics
#crispr
#sequencing
#computational
#prokaryotic
|
|
0
|
|
Large-scale simulation of coverage and error rate tradeoffs for cancer detection in cell-free DNA whole-genome sequencing.
(academic.oup.com)
|
Chen LT
…
Jager M
Bioinformatics
2026-08-01
|
#sequencing
#cancer
#ctdna
#simulation
#detection
|
|
0
|
|
Multifeature sequencing-based liquid biopsy for cancer diagnosis and monitoring.
(link.springer.com)
|
Molina MA
…
Hagey DW
Genome Medicine
2026-08-01
|
#liquid biopsy
#sequencing
#cancer
#cell-free dna
#machine learning
|
|
0
|
|
ViralQC: a tool for assessing completeness and contamination of predicted viral contigs.
(academic.oup.com)
|
Peng C
…
Sun Y
Bioinformatics
2026-08-01
|
#metagenomics
#virology
#sequencing
#quality control
#contamination
|
|
0
|
|
Investigation of an outbreak of Shigella sonnei bla (CTX-M-3) among men in England, 2025-26, using long- and short-read whole-genome sequencing.
(microbiologyresearch.org)
|
Turnbull JD
…
Jenkins C
Microbial Genomics
2026-08-01
|
#sequencing
#amr
#outbreak
#plasmid
#phylogenetic
|
|
0
|
|
theBIGbam: compression and interactive exploration of large-scale sequencing alignments with circular mapping support.
(academic.oup.com)
|
Boutroux M
…
Peter H
Bioinformatics
2026-08-01
|
#metagenomics
#sequencing
#visualization
#alignment
|
|
0
|
|
Persistent circulation of Rift Valley fever virus lineage C in Rwanda, 2022-2025.
(linkinghub.elsevier.com)
|
Udahemuka JC
…
Ndishimye P
One Health
2026-08-01
|
#sequencing
#surveillance
#zoonosis
#outbreak
#phylogenetics
|
|
0
|
|
RSHash: a fast and space-efficient hash table for k-mers.
(academic.oup.com)
|
Schulte-Mattler J
…
Reinert K
Bioinformatics
2026-08-01
|
#sequencing
#indexing
#metagenomics
#genomics
|
|
0
|
|
Optimizing culture-free approaches to recover high-quality Mycobacterium tuberculosis genomic variation.
(microbiologyresearch.org)
|
Walter KS
…
Andrews JR
Microbial Genomics
2026-08-01
|
#tb
#sequencing
#genomics
#algorithm
#diagnostic
|
|
0
|
|
A portable recalibration workflow for reference-based variant calling in non-human genomes.
(journals.plos.org)
|
Lee H
…
Lee YS
PLOS Computational Biology
2026-08-01
|
#variant calling
#recalibration
#sequencing
#genome
|
|
0
|
|
A Bacterial Microbiome Is Dispensable for the Induction of CD8 T Cell Exhaustion.
(onlinelibrary.wiley.com)
|
Kuhlmann M
…
Zehn D
European Journal of Immunology
2026-08-01
|
#exhaustion
#immunity
#microbiome
#sequencing
|
|
0
|
|
Leveraging ONT move table values for signal aware variant calling.
(academic.oup.com)
|
Yu X
…
Luo R
Bioinformatics
2026-08-01
|
#sequencing
#algorithm
#long-read
#signal processing
|
|
0
|
|
A population genomic resource for Drosophila pseudoobscura.
(academic.oup.com)
|
Manat Y
…
Meisel RP
G3: Genes, Genomes, Genetics
2026-08-01
|
#population genomics
#polymorphism
#sequencing
#evolution
#speciation
|
|
0
|
|
TPMM: three-component posterior mixture model enables robust inverton detection in low-depth metagenomes and suggests potential viral invertons.
(academic.oup.com)
|
Lu Y
…
Sun Y
Bioinformatics
2026-08-01
|
#metagenomics
#invertons
#sequencing
#phase variation
#bayesian
|
|
0
|
|
An ode to the 16S rRNA gene: its history, importance, caveats and future in microbiome research.
(microbiologyresearch.org)
|
Whelan FJ
…
Hall LJ
Microbial Genomics
2026-08-01
|
#microbiome
#sequencing
#metagenomics
#taxonomy
|
|
0
|
|
Growing up as an Immunologist Among Molecular Geneticists.
(onlinelibrary.wiley.com)
|
Rajewsky K
European Journal of Immunology
2026-08-01
|
#immunology
#mutagenesis
#antibody
#sequencing
|
|
0
|
|
Fatal Echovirus 11 Hepatitis in an Immunocompromised Adult Associated With Lineage 1.
(academic.oup.com)
|
Harryvan TJ
…
Limper M
Open Forum Infectious Diseases
2026-08-01
|
#hepatitis
#echovirus
#immunocompromised
#sequencing
|
|
0
|
|
Absence of Mycoplasma genitalium Strains Simultaneously Harboring Wild-Type gyrA, parC, and 23S rRNA Genes in Japan: Next-Generation Sequencing-Based Surveillance.
(academic.oup.com)
|
Nishino A
…
Deguchi T
Open Forum Infectious Diseases
2026-08-01
|
#amr
#sequencing
#surveillance
#antibiotic
|
|
0
|
|
Quantitative comparison of fungal genome assembly strategies using short and long reads from simulated and empirical sequencing data.
(microbiologyresearch.org)
|
Silva GAA
…
Willoughby JR
Microbial Genomics
2026-08-01
|
#assembly
#sequencing
#fungal
#benchmarking
#long-reads
|