|
0
|
|
gAIRR-wgs: high-resolution T cell receptor allele typing in biobank-scale whole-genome sequencing data.
(academic.oup.com)
|
Huang KT
…
Hsu JS
Briefings in Bioinformatics
2026-07-03
|
#sequencing
#immunogenetics
#genotyping
#receptor-repertoire
#population-genetics
|
|
0
|
|
Functional motif detection via in silico ablation using AlphaGenome.
(academic.oup.com)
|
Liang Y
…
Wang G
Briefings in Bioinformatics
2026-07-03
|
#regulation
#sequencing
#machine learning
#enhancer
#transcriptomics
|
|
0
|
|
DNA-DETR: sequence representation matters in object detection for functional genomic elements.
(academic.oup.com)
|
Tsai BS
…
Tsai HK
Briefings in Bioinformatics
2026-07-03
|
#detection
#sequencing
#representation
#genomics
|
|
0
|
|
Exploring per-base quality scores as a surrogate marker of cell-free DNA fragmentome.
(academic.oup.com)
|
Volkov H
…
Shomron N
Briefings in Bioinformatics
2026-07-03
|
#cancer
#sequencing
#fragmentomics
#cfdna
#classification
|
|
0
|
|
DeepKOALA: a scalable deep learning framework for KEGG Orthology assignment.
(academic.oup.com)
|
Yu Z
…
Ogata H
Briefings in Bioinformatics
2026-07-03
|
#deep learning
#annotation
#sequencing
#metagenomics
|
|
0
|
|
Dual-SVF: a robust knowledge-guided multimodal method for structural variant filtering in long-read sequencing.
(academic.oup.com)
|
Lai C
…
Yuan X
Briefings in Bioinformatics
2026-07-03
|
#sequencing
#structural-variants
#algorithm
#long-read
#genomics
|
|
0
|
|
An overview of self-supervised deep learning applications to molecular data.
(academic.oup.com)
|
Borras Ferris L
…
Muller H
Briefings in Bioinformatics
2026-07-03
|
#deep learning
#self-supervised learning
#omics
#sequencing
#representation learning
|
|
0
|
|
Efficient evidence-based genome annotation with EviAnn.
(nature.com)
|
Zimin AV
…
Salzberg SL
Nature Methods
2026-07-03
|
#annotation
#transcriptomics
#sequencing
#genomics
|
|
0
|
|
A one-week automated genome-wide optical pooled screen using OttoSeq.
(link.springer.com)
|
Kirby B
…
Blainey PC
Genome Biology
2026-07-03
|
#screening
#sequencing
#automation
#genomics
#phenotyping
|
|
0
|
|
VCboost: reducing false positives in long-read variant calling for single-nucleotide polymorphism and indel detection in challenging genomic regions.
(academic.oup.com)
|
Zhang Y
…
Dai Q
Briefings in Bioinformatics
2026-07-03
|
#sequencing
#algorithm
#deep learning
#indels
|
|
0
|
|
T-cell receptor alpha to beta chains binding prediction.
(academic.oup.com)
|
Siminovsky D
…
Louzoun Y
Briefings in Bioinformatics
2026-07-03
|
#tcr
#prediction
#machine learning
#immunology
#sequencing
|
|
0
|
|
STGBench: sequencing-level spatial DNA-RNA simulation for multimodal and virtual cell-oriented benchmarking of genomic alterations.
(academic.oup.com)
|
Wang S
…
Wang J
Briefings in Bioinformatics
2026-07-03
|
#transcriptomics
#sequencing
#simulation
#cnv
|
|
0
|
|
The case for caution in the application of whole-exome sequencing data for immune repertoire analysis.
(academic.oup.com)
|
Gong Z
…
Li S
Briefings in Bioinformatics
2026-07-03
|
#sequencing
#immunology
#repertoire
#methodology
#transcriptomics
|
|
0
|
|
MRDsteer: quality-aware AI-driven closed-loop optimization enhances ctDNA-based minimal residual disease detection.
(academic.oup.com)
|
Wang T
…
Wang J
Briefings in Bioinformatics
2026-07-03
|
#ctdna
#mrd
#cancer
#algorithm
#sequencing
|
|
0
|
|
De Bruijn graphs for pangenomics: in-depth performance benchmarking of de Bruijn graph-based tools for read mapping.
(academic.oup.com)
|
Bingol Z
…
Alkan C
Briefings in Bioinformatics
2026-07-03
|
#pan-genomics
#sequencing
#mapping
#benchmarking
#algorithms
|
|
0
|
|
Eras of bioinformatics technologies from command-line interfaces to artificial intelligence (AI) chatbots.
(academic.oup.com)
|
Truong VQ
…
Ritchie MD
Briefings in Bioinformatics
2026-07-03
|
#bioinformatics
#ai
#sequencing
#deep learning
#structural biology
|
|
0
|
|
Multi-modal data integration reveals functionally credible predictive biomarkers in ovarian cancer.
(link.springer.com)
|
Muranen TA
…
Hynninen J
Genome Medicine
2026-07-03
|
#transcriptomics
#cancer
#biomarker
#sequencing
#precision medicine
|
|
0
|
|
SEM mapping of sequence-specific protein-DNA interactions on long DNA molecules.
(academic.oup.com)
|
Noh C
…
Jo K
Nucleic Acids Research
2026-07-03
|
#microscopy
#protein-dna
#single-molecule
#sequencing
|
|
0
|
|
Hi-C informed kernel association test for integrating 3D genome structure into variant-set analysis.
(academic.oup.com)
|
Huang Y
…
Tzeng JY
Briefings in Bioinformatics
2026-07-03
|
#variants
#association
#genome
#sequencing
#statistics
|
|
0
|
|
Evidence-aware comparison of sequence-centric machine learning for antibody discovery and optimization.
(academic.oup.com)
|
Zhao J
…
Xie H
Briefings in Bioinformatics
2026-07-03
|
#antibody
#machine learning
#optimization
#sequencing
#design
|
|
0
|
|
Uncovering species- and drug-class-specific antimicrobial resistance mechanisms from large-scale whole-genome sequencing data using discordance analysis and machine learning.
(academic.oup.com)
|
Cheon NJ
…
Unno T
Briefings in Bioinformatics
2026-07-03
|
#amr
#sequencing
#machine learning
#genotype-phenotype
#annotation
|