|
0
|
|
AXOLOTL: an accurate method for detecting aberrant gene expression in rare diseases using coexpression constraints.
(academic.oup.com)
|
Xu W
…
Liu Y
Bioinformatics
2026-05-03
|
#transcriptomics
#gene expression
#rare disease
#variant prioritization
|
|
0
|
|
Cell-o1 : training LLMs to solve single-cell reasoning puzzles with reinforcement learning.
(academic.oup.com)
|
Fang Y
…
Lu Z
Bioinformatics
2026-05-03
|
#transcriptomics
#clustering
#modeling
#annotation
|
|
0
|
|
Nested co-expression network analysis identifies compact gene clusters in a black box.
(academic.oup.com)
|
Dyugay IA
…
Chudakov DM
Bioinformatics
2026-05-03
|
#transcriptomics
#clustering
#immunity
#biomarker
|
|
0
|
|
Trajectory-guided dimensionality reduction for multi-sample single-cell RNA-seq data reveals biologically relevant sample-level heterogeneity.
(academic.oup.com)
|
Zhuang H
…
Shi P
Bioinformatics
2026-05-03
|
#transcriptomics
#dimensionality reduction
#single-cell
#trajectory
#immunity
|
|
0
|
|
Identification of high-risk cells in single-cell spatially resolved transcriptomics data using Diagnostic Evidence GAuge of Single-cells with spatial smoothing.
(academic.oup.com)
|
Chatterjee D
…
Johnson TS
Bioinformatics
2026-05-03
|
#transcriptomics
#single-cell
#cancer
#modeling
|
|
0
|
|
Metappuccino: large language model-driven reconstruction of sequence read archive metadata for cancer research.
(academic.oup.com)
|
Hak F
…
Gallopin M
Bioinformatics
2026-05-03
|
#transcriptomics
#cancer
#sequencing
#metadata
#modeling
|
|
0
|
|
Reconstructing cell-cell interaction network in single-cell spatial transcriptomics via directed heterogeneous graph autoencoder.
(academic.oup.com)
|
Hu JX
…
Shen HB
Bioinformatics
2026-05-03
|
#transcriptomics
#autoencoder
#cell-cell interaction
#graph neural network
|
|
0
|
|
EMTscore infers divergent EMT pathways from omics data and enables rapid screening for EMT-associated gene sets.
(academic.oup.com)
|
Wen H
…
Hong T
Bioinformatics
2026-05-03
|
#transcriptomics
#emt
#cancer
#modeling
|
|
0
|
|
CancerOmicsStudio (CoS): a web server for integrative and interpretable analysis of multi-omics cancer data.
(academic.oup.com)
|
Liao C
…
Wang X
Bioinformatics
2026-05-03
|
#cancer
#multi-omics
#transcriptomics
#drug sensitivity
#single-cell
|
|
0
|
|
PyFgsea: a Rust-powered, fgseaMultilevel-aligned GSEA framework with rolling-window enrichment along single-cell trajectories.
(academic.oup.com)
|
Wang K
…
Shi H
Bioinformatics
2026-05-03
|
#enrichment
#transcriptomics
#clustering
#pathway
|
|
0
|
|
GR2ST: spatial transcriptomics prediction based on graph-enhanced multimodal contrastive learning.
(academic.oup.com)
|
Zhou J
…
Li J
Bioinformatics
2026-05-03
|
#transcriptomics
#deep learning
#contrastive learning
#cancer
|
|
0
|
|
DiSCO: deconvoluting spatial transcriptomics via combinatorial optimization with a foundational diffusion model.
(academic.oup.com)
|
Liu J
…
Li L
Briefings in Bioinformatics
2026-05-03
|
#transcriptomics
#deconvolution
#diffusion
#modeling
|
|
0
|
|
From early-onset asthma to chronic obstructive pulmonary disease: potential mediating proteins and therapeutic targets.
(academic.oup.com)
|
Jiang Y
…
Yang H
Briefings in Bioinformatics
2026-05-03
|
#proteomics
#mendelian randomization
#copd
#asthma
#transcriptomics
|
|
0
|
|
QCatch: a framework for quality control assessment and analysis of single-cell sequencing data.
(academic.oup.com)
|
Gao Y
…
Patro R
Bioinformatics
2026-05-03
|
#sequencing
#quality control
#transcriptomics
|
|
0
|
|
Refining sequence-to-expression modelling with chromatin accessibility.
(academic.oup.com)
|
Lapohos O
…
Emad A
Bioinformatics
2026-05-03
|
#modeling
#transcriptomics
#chromatin
#regulation
|
|
0
|
|
Local transcriptional covariation produces accurate estimates of cell phenotype.
(academic.oup.com)
|
Ozbay S
…
Singh R
Bioinformatics
2026-05-03
|
#transcriptomics
#single-cell
#coexpression
#phenotype
#clustering
|
|
0
|
|
REACTOR: REgulon Activity analysis and Comparison Tool for single-cell transcriptOmics Research.
(academic.oup.com)
|
Linden M
…
Elo LL
Bioinformatics
2026-05-03
|
#transcriptomics
#single-cell
#regulon
#differential expression
|