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0
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Supervised fine-tuning enhances unsupervised learning from 45 million amino acids in TCR and peptide sequences.
(academic.oup.com)
|
Zhou K
…
Yao X
Bioinformatics
2026-05-03
|
#modeling
#proteomics
#immunity
#sequencing
|
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0
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Singletrack: an algorithm for improving memory consumption and performance of gap-affine sequence alignment.
(academic.oup.com)
|
Lopez-Villellas L
…
Marco-Sola S
Bioinformatics
2026-05-03
|
#sequencing
#algorithm
#alignment
|
|
0
|
|
Metappuccino: large language model-driven reconstruction of sequence read archive metadata for cancer research.
(academic.oup.com)
|
Hak F
…
Gallopin M
Bioinformatics
2026-05-03
|
#modeling
#transcriptomics
#cancer
#sequencing
#metadata
|
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0
|
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MegaPX: fast and space-efficient peptide assignment method using IBF-based multi-indexing.
(academic.oup.com)
|
Lutfi A
…
Muth T
Bioinformatics
2026-05-03
|
#microbiome
#proteomics
#metagenomics
#sequencing
#taxonomy
|
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0
|
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RAREsim2: flexible simulation of rare variant genetic data using real haplotypes.
(academic.oup.com)
|
Murphy JI
…
Hendricks AE
Bioinformatics
2026-05-03
|
#modeling
#sequencing
#genetics
#simulation
|
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0
|
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ChASM: a statistically rigorous method for the detection of chromosomal aneuploidies in ancient DNA studies.
(academic.oup.com)
|
Rohrlach AB
…
Haak W
Bioinformatics
2026-05-03
|
#paleogenomics
#sequencing
#aneuploidy
#bayesian
|
|
0
|
|
Utilization of long-read sequencing for the detection of structural rearrangements with AgileStructure.
(academic.oup.com)
|
Lascelles C
…
Carr IM
Bioinformatics
2026-05-03
|
#genomics
#assembly
#sequencing
#structural variation
|
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0
|
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nf-core/viralmetagenome: A novel pipeline for untargeted viral genome reconstruction.
(academic.oup.com)
|
Klaps J
…
Kafetzopoulou LE
Bioinformatics
2026-05-03
|
#metagenomics
#assembly
#sequencing
#surveillance
#virology
|
|
0
|
|
BABAPPAlign: a multiple sequence alignment engine with a learned residue-level scoring function.
(academic.oup.com)
|
Sinha K
Bioinformatics
2026-05-03
|
#sequencing
#machine learning
#alignment
|
|
0
|
|
Accelerated long-read variant calling with Clair3 for whole-genome sequencing.
(academic.oup.com)
|
Zheng Z
…
Luo R
Bioinformatics
2026-05-03
|
#sequencing
#deep learning
#variant calling
#acceleration
|
|
0
|
|
Protein language model embeddings improve HIV drug resistance prediction: a comprehensive benchmark with attention-based interpretability.
(academic.oup.com)
|
Farquhar H
Bioinformatics
2026-05-03
|
#amr
#sequencing
#prediction
#machine learning
#protein language models
|
|
0
|
|
FALCON2: compression-based metagenomic classification of ancient viruses.
(academic.oup.com)
|
Marques LL
…
Pratas D
Bioinformatics
2026-05-03
|
#metagenomics
#paleogenomics
#sequencing
#classification
|
|
0
|
|
QCatch: a framework for quality control assessment and analysis of single-cell sequencing data.
(academic.oup.com)
|
Gao Y
…
Patro R
Bioinformatics
2026-05-03
|
#transcriptomics
#sequencing
#quality control
|
|
0
|
|
FuFiHLA: a tool for full-field HLA typing from long-read data.
(academic.oup.com)
|
Hu J
…
Zhou Y
Bioinformatics
2026-05-03
|
#immunity
#sequencing
#hla
#typing
|
|
0
|
|
Sassy: fuzzy searching DNA sequences using SIMD.
(academic.oup.com)
|
Beeloo R
…
Groot Koerkamp R
Bioinformatics
2026-05-03
|
#assembly
#sequencing
#crispr
|
|
0
|
|
Duplex-Indel: a Snakemake pipeline for somatic Indel calling in Tn5 transposase-based duplex sequencing data.
(academic.oup.com)
|
Dong G
…
Lee EA
Bioinformatics
2026-05-03
|
#cancer
#sequencing
#mutation
|
|
0
|
|
FUSE: data-driven functional segmentation of DNA methylation data.
(academic.oup.com)
|
Holmstrom S
…
Lahtinen A
Bioinformatics
2026-05-03
|
#methylation
#sequencing
#gene regulation
#segmentation
|