|
0
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BrainConnect: processing brain connectivity and spatial transcriptomics data for integrative analysis.
(academic.oup.com)
|
Sang C
…
Peng C
Bioinformatics
2026-02-28
|
#transcriptomics
#connectome
#neural
#modeling
#integration
|
|
0
|
|
GeneExt: a gene model extension tool for enhanced single-cell RNA-seq analysis.
(academic.oup.com)
|
Zolotarov G
…
Sebe-Pedros A
Bioinformatics
2026-02-28
|
#transcriptomics
#sequencing
#annotation
#expression
|
|
0
|
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ORFannotate: reproducible coding sequence annotation of transcriptome assemblies.
(academic.oup.com)
|
Garcia-Ruiz S
…
Gustavsson EK
Bioinformatics
2026-02-28
|
#transcriptomics
#annotation
#assembly
#sequencing
|
|
0
|
|
scMix: learning temporal dynamics of gene expression under irregular time intervals.
(academic.oup.com)
|
Han S
…
Kim D
Bioinformatics
2026-02-28
|
#transcriptomics
#modeling
#single-cell
#differentiation
#prediction
|
|
0
|
|
CEMUSA: a graph-based integrative metric for evaluating clusters in spatial transcriptomics.
(academic.oup.com)
|
Hu J
…
Sun X
Bioinformatics
2026-02-28
|
#transcriptomics
#clustering
#evaluation
|
|
0
|
|
A hybrid neighborhood enhanced contrastive learning and self-knowledge distillation method for scRNA-seq data clustering analysis.
(academic.oup.com)
|
Qi L
…
Chen C
Bioinformatics
2026-02-28
|
#transcriptomics
#clustering
#single-cell
#machine learning
|
|
0
|
|
umite: fast quantification of Smart-seq3 libraries with improved UMI retrieval.
(academic.oup.com)
|
Foerster LC
…
Martin-Villalba A
Bioinformatics
2026-02-28
|
#sequencing
#transcriptomics
#clustering
|
|
0
|
|
CoMBCR: Co-Learning Multi-Modalities of BCRs and gene expressions.
(academic.oup.com)
|
Zou Y
…
Li S
Bioinformatics
2026-02-28
|
#immunity
#transcriptomics
#embedding
#lymphoma
#modeling
|
|
0
|
|
Using semantic search to find publicly available gene-expression datasets.
(academic.oup.com)
|
Brown GS
…
Piccolo SR
Bioinformatics
2026-02-28
|
#transcriptomics
#semantic search
#machine learning
|
|
0
|
|
CCC-GPU: a graphics processing unit (GPU)-accelerated nonlinear correlation coefficient for large-scale transcriptomic analyses.
(academic.oup.com)
|
Zhang H
…
Pividori M
Bioinformatics
2026-02-28
|
#transcriptomics
#clustering
#correlation
|
|
0
|
|
Decoding exon inclusion in the human brain reveals more divergent splicing mechanisms in neurons than glia.
(link.springer.com)
|
Michielsen L
…
Mahfouz A
Genome Biology
2026-02-28
|
#splicing
#transcriptomics
#neuronal
#rna binding
#prediction
|
|
0
|
|
Dogme: a nextflow pipeline for reprocessing nanopore RNA and DNA modifications.
(academic.oup.com)
|
Abdollahzadeh E
…
Mortazavi A
Bioinformatics
2026-02-28
|
#sequencing
#modifications
#transcriptomics
#basecalling
#pipeline
|
|
0
|
|
Differential cell signaling testing for cell-cell communication inference from single-cell data by dominoSignal.
(academic.oup.com)
|
Mitchell JT
…
Fertig EJ
Bioinformatics
2026-02-28
|
#transcriptomics
#cell-cell communication
#signaling
#clustering
|
|
0
|
|
stDyer-image improves clustering analysis of spatially resolved transcriptomics and proteomics with morphological images.
(academic.oup.com)
|
Xu K
…
Zhang L
Bioinformatics
2026-02-28
|
#transcriptomics
#proteomics
#clustering
#imaging
#deep learning
|
|
0
|
|
Souporcell3: robust demultiplexing for high-donor single-cell RNA-seq datasets.
(academic.oup.com)
|
Weerakoon M
…
Heaton H
Bioinformatics
2026-02-28
|
#demultiplexing
#transcriptomics
#clustering
#genotyping
|
|
0
|
|
Beyond blacklists: a critical assessment of exclusion set generation strategies and alternative approaches.
(academic.oup.com)
|
Wall BPG
…
Dozmorov MG
Bioinformatics
2026-02-28
|
#sequencing
#alignment
#transcriptomics
#assembly
|
|
0
|
|
TerminatorNet: comprehensive identification of intrinsic transcription terminators in bacteria.
(academic.oup.com)
|
Tjaden B
Bioinformatics
2026-02-28
|
#transcriptomics
#machine learning
#genomics
#gene regulation
|
|
0
|
|
FishFeats: streamlined quantification of multimodal labeling at the single-cell level in 3D tissues.
(academic.oup.com)
|
Letort G
…
Dray N
Bioinformatics
2026-02-28
|
#imaging
#segmentation
#transcriptomics
#quantification
|
|
0
|
|
scDock: streamlining drug discovery targeting cell-cell communication via scRNA-seq analysis and molecular docking.
(academic.oup.com)
|
Huang CH
…
Juan HF
Bioinformatics
2026-02-28
|
#transcriptomics
#drug discovery
#docking
#cell-communication
#signaling
|
|
0
|
|
scDBic: a novel deep learning-based biclustering algorithm for analyzing scRNA-seq data.
(academic.oup.com)
|
Tang X
…
Lan C
Bioinformatics
2026-02-28
|
#transcriptomics
#clustering
#deep learning
#biclustering
|