|
0
|
|
GeneExt: a gene model extension tool for enhanced single-cell RNA-seq analysis.
(academic.oup.com)
|
Zolotarov G
…
Sebe-Pedros A
Bioinformatics
2026-02-28
|
#transcriptomics
#sequencing
#annotation
#expression
|
|
0
|
|
Accelerating minimap2 for whole-genome alignment.
(academic.oup.com)
|
Chandra G
…
Jain C
Bioinformatics
2026-02-28
|
#assembly
#sequencing
#alignment
|
|
0
|
|
RUMINA: high-throughput deduplication of unique molecular identifiers for amplicon and whole-genome sequencing with enhanced error correction.
(academic.oup.com)
|
Piliper E
…
Greninger AL
Bioinformatics
2026-02-28
|
#error-correction
#sequencing
#amplicon
#deduplication
|
|
0
|
|
Competing subclones and fitness diversity shape tumor evolution across cancer types.
(academic.oup.com)
|
Chen H
…
Liu L
Bioinformatics
2026-02-28
|
#modeling
#cancer
#evolution
#sequencing
#heterogeneity
|
|
0
|
|
PyEvoMotion: a Python tool for population-based time-course analysis of genome evolution.
(academic.oup.com)
|
Goiriz L
…
Rodrigo G
Bioinformatics
2026-02-28
|
#modeling
#phylogenomics
#evolution
#sequencing
#molecular clock
|
|
0
|
|
Response to: "best practices when benchmarking CATCH for the design of genome enrichment probes".
(academic.oup.com)
|
Alanko JN
…
Boucher C
Bioinformatics
2026-02-28
|
#metagenomics
#assembly
#sequencing
#clustering
|
|
0
|
|
ORFannotate: reproducible coding sequence annotation of transcriptome assemblies.
(academic.oup.com)
|
Garcia-Ruiz S
…
Gustavsson EK
Bioinformatics
2026-02-28
|
#transcriptomics
#assembly
#sequencing
#annotation
|
|
0
|
|
PARANOiD: Pipeline for Automated Read ANalysis of iCLIP Data.
(academic.oup.com)
|
Barth P
…
Goesmann A
Bioinformatics
2026-02-28
|
#sequencing
#rna-protein
#binding
#clip
|
|
0
|
|
PScnv: personalized self-normalizing CNV detection with a hierarchical multi-phase framework.
(academic.oup.com)
|
Wang X
…
Wang J
Bioinformatics
2026-02-28
|
#cancer
#sequencing
#segmentation
#cnv
#normalization
|
|
0
|
|
Multi-context seeds enable fast and high-accuracy read mapping.
(link.springer.com)
|
Tolstoganov I
…
Sahlin K
Genome Biology
2026-02-28
|
#metagenomics
#sequencing
#alignment
|
|
0
|
|
FFC: a scalable FASTA compressor.
(academic.oup.com)
|
Grabowski S
…
Susik R
Bioinformatics
2026-02-28
|
#assembly
#sequencing
#compression
|
|
0
|
|
umite: fast quantification of Smart-seq3 libraries with improved UMI retrieval.
(academic.oup.com)
|
Foerster LC
…
Martin-Villalba A
Bioinformatics
2026-02-28
|
#transcriptomics
#sequencing
#clustering
|
|
0
|
|
Finding low-complexity DNA sequences with longdust.
(academic.oup.com)
|
Li H
…
Li B
Bioinformatics
2026-02-28
|
#assembly
#sequencing
#algorithm
|
|
0
|
|
Intestinal epithelial TLR4 knock out induces sex-specific effects on gut barrier and microbiome in an activity-based anorexia model.
(tandfonline.com)
|
Salaun C
…
Coeffier M
Gut Microbes
2026-02-28
|
#microbiome
#immunity
#inflammation
#sequencing
#anorexia
|
|
0
|
|
UPDhmm: detecting uniparental disomy from NGS trio data.
(academic.oup.com)
|
Sevilla-Porras M
…
Perez-Jurado LA
Bioinformatics
2026-02-28
|
#modeling
#sequencing
#mutation
#autism
|
|
0
|
|
Identification of autosomal and sex chromosome aneuploidies using next generation sequencing.
(academic.oup.com)
|
Barco-Armengol N
…
Fernandez G
Bioinformatics
2026-02-28
|
#sequencing
#diagnostics
#aneuploidy
#cytogenomics
|
|
0
|
|
Dogme: a nextflow pipeline for reprocessing nanopore RNA and DNA modifications.
(academic.oup.com)
|
Abdollahzadeh E
…
Mortazavi A
Bioinformatics
2026-02-28
|
#transcriptomics
#sequencing
#modifications
#basecalling
#pipeline
|
|
0
|
|
Nallo: a Nextflow pipeline for comprehensive human long-read genome analysis.
(academic.oup.com)
|
Lenner F
…
Feuk L
Bioinformatics
2026-02-28
|
#methylation
#assembly
#sequencing
#variants
|
|
0
|
|
Rawsamble: overlapping raw nanopore signals using a hash-based seeding mechanism.
(academic.oup.com)
|
Firtina C
…
Mutlu O
Bioinformatics
2026-02-28
|
#nanopore
#assembly
#sequencing
#basecalling
|
|
0
|
|
Beyond blacklists: a critical assessment of exclusion set generation strategies and alternative approaches.
(academic.oup.com)
|
Wall BPG
…
Dozmorov MG
Bioinformatics
2026-02-28
|
#transcriptomics
#assembly
#sequencing
#alignment
|