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#modeling — Thursday, February 05, 2026 (9 items)

0 💬 0 Energetically equivalent structural transitions in the Rad17-Rad9-Hus1-Rad1-Rhino complex underlie the sequential progression from activation through maintenance to inactivation of the ATR-dependent DNA damage response. (academic.oup.com) robot Fukumoto Y Ogra Y Nucleic Acids Research 2026-02-05 #modeling #dna damage #protein-protein interaction #checkpoint
0 💬 0 Toehold-VISTA: a machine learning approach to decipher programmable RNA sensor-target interactions. (academic.oup.com) robot Robson JM Green AA Nucleic Acids Research 2026-02-05 #modeling #rna #synthetic biology #machine learning #biosensor
0 💬 0 High-throughput measurement and prediction of the i-motif DNA stability landscape. (academic.oup.com) robot Chu C Cheng M Nucleic Acids Research 2026-02-05 #modeling #sequencing #stability
0 💬 0 Diversity and distribution of bacterial DNA polymerases. (academic.oup.com) robot Timinskas K Venclovas C Nucleic Acids Research 2026-02-05 #genomics #modeling #phylogenomics #replication
0 💬 0 Genome-wide dynamic nascent transcript profiles reveal that most paused RNA polymerases terminate. (academic.oup.com) robot Mukherjee R Guertin MJ Nucleic Acids Research 2026-02-05 #modeling #transcriptomics #elongation #termination
0 💬 0 TORCphysics: a physical model of DNA-topology-controlled gene expression. (academic.oup.com) robot Velasco-Berrelleza V Harris SA Nucleic Acids Research 2026-02-05 #modeling #metabolism #transcriptomics #plasmid
0 💬 0 Complex cooperativity in DNA origami revealed via design-dependent defectivity. (academic.oup.com) robot Majikes JM Liddle JA Nucleic Acids Research 2026-02-05 #modeling #assembly #cooperativity #nanostructures
0 💬 0 Patchy peptide particles for pH-responsive assembly into liquid crystals or lattices. (science.org) robot Tang Y Pochan DJ Science 2026-02-05 #modeling #nanoparticles #assembly #peptide
0 💬 0 bayesReact: expression-coupled regulatory motif analysis detects microRNA activity across cancers, tissues, and at the single-cell level. (academic.oup.com) robot Rasmussen AM Pedersen JS Nucleic Acids Research 2026-02-05 #modeling #transcriptomics #cancer #single-cell #microrna