|
0
|
|
iModMix: integrative module analysis for multi-omics data.
(academic.oup.com)
|
Narvaez-Bandera I
…
Stewart PA
Bioinformatics
2026-02-03
|
#metabolomics
#proteomics
#transcriptomics
#integration
#clustering
|
|
0
|
|
Quantifying pathological progression from single-cell transcriptomic data with scPSS.
(genome.cshlp.org)
|
Khan SR
…
Samee MAH
Genome Research
2026-02-03
|
#transcriptomics
#clustering
#modeling
#disease
|
|
0
|
|
A scalable computational framework for predicting gene expression from candidate cis-regulatory elements.
(genome.cshlp.org)
|
Zhang Q
…
Huang DS
Genome Research
2026-02-03
|
#transcriptomics
#gene expression
#modeling
#epigenomics
#regulation
|
|
0
|
|
PETScan: score-based genome-wide association analysis of RNA-Seq and ATAC-Seq data.
(academic.oup.com)
|
Hao Y
…
Zou F
Bioinformatics
2026-02-03
|
#epigenomics
#transcriptomics
#association
#chromatin
#regulatory
|
|
0
|
|
Transcription and potential functions of a novel XIST isoform in male peripheral glia.
(genome.cshlp.org)
|
O'Leary KS
…
Zheng D
Genome Research
2026-02-03
|
#transcriptomics
#epigenomics
#x-inactivation
#glia
#single-cell
|
|
0
|
|
How negative sampling shapes the performance of transcription factor binding site prediction models.
(academic.oup.com)
|
Tourne N
…
Waegeman W
Bioinformatics
2026-02-03
|
#transcriptomics
#modeling
#binding
#sequencing
|
|
0
|
|
Landscape of microRNA and target expression variation and covariation in single mouse embryonic stem cells.
(genome.cshlp.org)
|
Tarbier M
…
Friedlander MR
Genome Research
2026-02-03
|
#stem cell
#transcriptomics
#microrna
#single-cell
#gene regulation
|
|
0
|
|
Self-supervised pretraining with NuSPIRe unlocks nuclear morphology-driven insights in spatial omics.
(link.springer.com)
|
Hua Y
…
Zhang Y
Genome Biology
2026-02-03
|
#morphology
#spatial omics
#deep learning
#transcriptomics
#phenotype
|
|
0
|
|
Tensor-cell2cell v2 unravels coordinated dynamics of protein- and metabolite-mediated cell-cell communication.
(academic.oup.com)
|
Armingol E
…
Lewis NE
Bioinformatics
2026-02-03
|
#transcriptomics
#cell-communication
#metabolism
#modeling
|
|
0
|
|
scSHEFT enables multiomics label transfer from scRNA-seq to scATAC-seq through dual alignment.
(genome.cshlp.org)
|
Huang Z
…
Li M
Genome Research
2026-02-03
|
#multi-omics
#transcriptomics
#clustering
#alignment
|
|
0
|
|
Transcriptomic landscape of transposable elements reveals LTR7-PLAAT4 as a potential oncogene and therapeutic target in pancreatic adenocarcinoma.
(genome.cshlp.org)
|
Shi M
…
Li J
Genome Research
2026-02-03
|
#transcriptomics
#cancer
#immunotherapy
#neoantigens
#oncogene
|
|
0
|
|
COBRAxy: constraint-based metabolic modeling in Galaxy.
(academic.oup.com)
|
Lapi F
…
Damiani C
Bioinformatics
2026-02-03
|
#modeling
#metabolism
#flux
#transcriptomics
|
|
0
|
|
Haplotype-resolved and near telomere-to-telomere assembly of the autotetraploid potato genome.
(link.springer.com)
|
Xiao PX
…
Jiao WB
Genome Biology
2026-02-03
|
#assembly
#polyploidy
#haplotype
#transcriptomics
#epigenomics
|
|
0
|
|
X-intNMF: a cross- and intra-omics regularized NMF framework for multi-omics integration.
(academic.oup.com)
|
Bui TT
…
Zhang W
Bioinformatics
2026-02-03
|
#integration
#multi-omics
#modeling
#cancer
#transcriptomics
|
|
0
|
|
Intronic polyadenylation-derived long noncoding RNA modulates nucleolar integrity and function.
(pnas.org)
|
Mallick S
…
Singh I
PNAS
2026-02-03
|
#transcriptomics
#nucleolus
#rrna processing
#cancer
#ncrna
|
|
0
|
|
Learning a pairwise epigenomic and transcription factor binding association score across the human genome.
(academic.oup.com)
|
Kwon SB
…
Ernst J
Bioinformatics
2026-02-03
|
#epigenomics
#transcriptomics
#modeling
#machine learning
|
|
0
|
|
UCell and pyUCell: single-cell gene signature scoring for R and Python.
(academic.oup.com)
|
Andreatta M
…
Carmona SJ
Bioinformatics
2026-02-03
|
#transcriptomics
#clustering
#scoring
|
|
0
|
|
Integrated mutational landscape analysis of endometrial stromal sarcoma.
(pnas.org)
|
Hartwich TMP
…
Santin AD
PNAS
2026-02-03
|
#cancer
#sequencing
#mutation
#oncology
#transcriptomics
|
|
0
|
|
The ppGpp-HpaR1-gum regulatory pathway modulates exopolysaccharides production in Xanthomonas campestris pv. campestris.
(nature.com)
|
Bai K
…
Luo L
npj Biofilms and Microbiomes
2026-02-03
|
#biofilm
#exopolysaccharide
#transcriptomics
#virulence
#metabolism
|
|
0
|
|
Germline fate determination by a single ARGONAUTE protein in Ectocarpus.
(pnas.org)
|
Bukhanets V
…
Coelho SM
PNAS
2026-02-03
|
#rnai
#transcriptomics
#gene regulation
|
|
0
|
|
Inference of marker genes of subtle cell state changes via iLR: iterative logistic regression.
(academic.oup.com)
|
Liu Y
…
MacLean AL
Bioinformatics
2026-02-03
|
#transcriptomics
#clustering
#immunotherapy
#autism
#biomarker
|
|
0
|
|
A temporal and spatial atlas of adaptive immune responses in the lymph node following viral infection.
(pnas.org)
|
Jiang S
…
De Vlaminck I
PNAS
2026-02-03
|
#transcriptomics
#immunity
#infection
#sequencing
#spatialanalysis
|
|
0
|
|
Olfactory inputs to appetite neurons in the hypothalamus.
(pnas.org)
|
Kuang D
…
Buck LB
PNAS
2026-02-03
|
#neuroscience
#transcriptomics
#appetite
#olfaction
|
|
0
|
|
STransfer: a transfer learning-enhanced graph convolutional network for clustering spatial transcriptomics data.
(academic.oup.com)
|
Wang C
…
Yu X
Bioinformatics
2026-02-03
|
#graph neural network
#transcriptomics
#clustering
#transfer learning
|
|
0
|
|
transFusion: a novel comprehensive platform for integration analysis of single-cell and spatial transcriptomics.
(academic.oup.com)
|
Lin W
…
Deng H
Bioinformatics
2026-02-03
|
#transcriptomics
#integration
#visualization
|
|
0
|
|
A spectral dimension reduction technique that improves pattern detection in multivariate spatial data.
(academic.oup.com)
|
Kohler D
…
Tresch A
Bioinformatics
2026-02-03
|
#transcriptomics
#clustering
#dimensionality reduction
|