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0
|
|
The dynamics of cooperation in asymmetric public goods games.
(pnas.org)
|
Wang X
…
Zhang B
PNAS
2026-02-03
|
#cooperation
#modeling
#game theory
#collective action
|
|
0
|
|
Large declines in organofluorine contamination indicated by subarctic marine mammal tissues.
(pnas.org)
|
Sun JM
…
Sunderland EM
PNAS
2026-02-03
|
#bioaccumulation
#contamination
#pfas
#toxicology
#modeling
|
|
0
|
|
Quantifying pathological progression from single-cell transcriptomic data with scPSS.
(genome.cshlp.org)
|
Khan SR
…
Samee MAH
Genome Research
2026-02-03
|
#transcriptomics
#clustering
#modeling
#disease
|
|
0
|
|
TrIPP: a trajectory iterative pKa predictor.
(academic.oup.com)
|
Matsingos C
…
Fornili A
Bioinformatics
2026-02-03
|
#modeling
#proteomics
#dynamics
|
|
0
|
|
A scalable computational framework for predicting gene expression from candidate cis-regulatory elements.
(genome.cshlp.org)
|
Zhang Q
…
Huang DS
Genome Research
2026-02-03
|
#transcriptomics
#gene expression
#modeling
#epigenomics
#regulation
|
|
0
|
|
Autoencoders for genomic variation analysis.
(genome.cshlp.org)
|
Geleta M
…
Ioannidis AG
Genome Research
2026-02-03
|
#genomics
#modeling
#population structure
#dimensionality reduction
#machine learning
|
|
0
|
|
How negative sampling shapes the performance of transcription factor binding site prediction models.
(academic.oup.com)
|
Tourne N
…
Waegeman W
Bioinformatics
2026-02-03
|
#transcriptomics
#modeling
#binding
#sequencing
|
|
0
|
|
Tensor-cell2cell v2 unravels coordinated dynamics of protein- and metabolite-mediated cell-cell communication.
(academic.oup.com)
|
Armingol E
…
Lewis NE
Bioinformatics
2026-02-03
|
#transcriptomics
#cell-communication
#metabolism
#modeling
|
|
0
|
|
Conformationally gated multisite proton-coupled electron transfer in the ribonucleotide reductase beta subunit.
(pnas.org)
|
Deng J
…
Hammes-Schiffer S
PNAS
2026-02-03
|
#pcet
#modeling
#enzyme
#radical
|
|
0
|
|
COBRAxy: constraint-based metabolic modeling in Galaxy.
(academic.oup.com)
|
Lapi F
…
Damiani C
Bioinformatics
2026-02-03
|
#modeling
#metabolism
#flux
#transcriptomics
|
|
0
|
|
Dynamics of memory B cells and plasmablasts in healthy individuals.
(pnas.org)
|
Mazzolini A
…
Mora T
PNAS
2026-02-03
|
#immunity
#sequencing
#modeling
#memory
|
|
0
|
|
Evolutionary pathways in epistatic mechanical networks.
(pnas.org)
|
Alqatari S
…
Nagel SR
PNAS
2026-02-03
|
#evolution
#epistasis
#modeling
#mutation
|
|
0
|
|
Active learning design of bcc solid solution alloys with gigapascal strength and elemental metal-level ductility.
(pnas.org)
|
Wang Z
…
Ma E
PNAS
2026-02-03
|
#machine learning
#optimization
#alloys
#modeling
|
|
0
|
|
The kinetochore corona orchestrates chromosome congression through transient microtubule interactions.
(pnas.org)
|
Miles CE
…
Khodjakov A
PNAS
2026-02-03
|
#kinetochore
#mitosis
#modeling
#microtubule
#chromosome
|
|
0
|
|
A framework integrating multiscale in silico modeling and experimental data predicts CAR-NK cell cytotoxicity across target cell types.
(pnas.org)
|
Ahmad S
…
Das J
PNAS
2026-02-03
|
#modeling
#cytotoxicity
#immunotherapy
#cancer
#immunity
|
|
0
|
|
X-intNMF: a cross- and intra-omics regularized NMF framework for multi-omics integration.
(academic.oup.com)
|
Bui TT
…
Zhang W
Bioinformatics
2026-02-03
|
#integration
#multi-omics
#modeling
#cancer
#transcriptomics
|
|
0
|
|
Representational drift reflects ongoing balancing of stochastic changes by Hebbian learning.
(pnas.org)
|
Eppler JB
…
Kaschube M
PNAS
2026-02-03
|
#plasticity
#imaging
#learning
#cortex
#modeling
|
|
0
|
|
De novo protein-ligand design including protein flexibility and conformational adaptation.
(academic.oup.com)
|
Agamia J
…
Zacharias M
Bioinformatics
2026-02-03
|
#modeling
#docking
#drug design
#protein structure
|
|
0
|
|
Learning a pairwise epigenomic and transcription factor binding association score across the human genome.
(academic.oup.com)
|
Kwon SB
…
Ernst J
Bioinformatics
2026-02-03
|
#epigenomics
#transcriptomics
#modeling
#machine learning
|
|
0
|
|
A computational framework for sensitive tumor detection and accurate subtyping using shallow cell-free DNA methylome sequencing.
(link.springer.com)
|
Paoli M
…
Benelli M
Genome Medicine
2026-02-03
|
#methylation
#cancer
#sequencing
#biomarker
#modeling
|
|
0
|
|
LtransHeteroGGM: local transfer learning for Gaussian graphical model-based heterogeneity analysis.
(academic.oup.com)
|
Li C
…
Ren M
Bioinformatics
2026-02-03
|
#modeling
#transfer learning
#heterogeneity
#single-cell
#network
|
|
0
|
|
Functional motifs in food webs and networks.
(pnas.org)
|
Habermann M
…
Gross T
PNAS
2026-02-03
|
#foodweb
#network
#stability
#modeling
|
|
0
|
|
Payoff equivalence and complete strategy spaces of direct reciprocity.
(pnas.org)
|
LaPorte P
…
Nowak MA
PNAS
2026-02-03
|
#modeling
#game theory
#cooperation
#evolution
|
|
0
|
|
Ten-year (15)N labeling reveals the nitrogen retention threshold for maximizing carbon sequestration in a temperate forest.
(pnas.org)
|
Liu B
…
Bai E
PNAS
2026-02-03
|
#nitrogen cycling
#carbon sequestration
#modeling
#forest ecosystem
|
|
0
|
|
The seeds of the future are in the present: A blind exploration of metastable states.
(pnas.org)
|
Devergne T
…
Parrinello M
PNAS
2026-02-03
|
#modeling
#simulation
#sampling
|
|
0
|
|
The role of fluctuations in the nucleation process.
(pnas.org)
|
Deng Y
…
Parrinello M
PNAS
2026-02-03
|
#nucleation
#modeling
#crystallography
|
|
0
|
|
In silico analysis and comparison of the metabolic capabilities of different organisms by reducing metabolic complexity.
(link.springer.com)
|
Vayena E
…
Hatzimanikatis V
Microbiome
2026-02-03
|
#metabolism
#modeling
#microbiome
#phylogenomics
|
|
0
|
|
GeoGAD: geometry-aware antibody design framework for complementarity-determining region precision engineering.
(academic.oup.com)
|
Wei S
…
Tan J
Bioinformatics
2026-02-03
|
#antibody
#modeling
#design
|
|
0
|
|
VUScope: a mathematical model for evaluating image-based drug response measurements and predicting long-term incubation outcomes.
(academic.oup.com)
|
Tran NK
…
Qin N
Bioinformatics
2026-02-03
|
#modeling
#imaging
#dose-response
#prediction
|
|
0
|
|
Arabidopsis thaliana phytochrome A sensory properties in canopy shade.
(pnas.org)
|
Prizeman-Green P
…
Halliday KJ
PNAS
2026-02-03
|
#photomorphogenesis
#phytochrome
#shade
#modeling
#light
|
|
0
|
|
Unavailability of experimental 3D structural data on protein folding dynamics and necessity for a new generation of structure prediction methods in this context.
(academic.oup.com)
|
Wells A
…
Milenkovic T
Bioinformatics
2026-02-03
|
#structure prediction
#modeling
#misfolding
#folding
|