|
0
|
|
Non-negative matrix factorization and deconvolution as a dual simplex problem.
(link.springer.com)
|
Kleverov D
…
Artyomov MN
Genome Biology
2026-01-14
|
#deconvolution
#transcriptomics
#modeling
#optimization
|
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0
|
|
A transcriptomic and proteomic map of primary human cell types.
(academic.oup.com)
|
Mun DG
…
Pandey A
Nucleic Acids Research
2026-01-14
|
#transcriptomics
#proteomics
#cell-types
#post-translational-modifications
|
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0
|
|
Influence of DNA methylation and chromatin accessibility on regulation of gene expression during Trichomonas vaginalis-host cell interaction.
(journals.asm.org)
|
Munoz D
…
de Miguel N
mBio
2026-01-14
|
#epigenetics
#transcriptomics
#pathogenesis
#chromatin
#parasitism
|
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0
|
|
Distal enhancers regulate mammalian early embryonic lineage differentiation through long-range interactions.
(academic.oup.com)
|
Zhu Q
…
Li J
Nucleic Acids Research
2026-01-14
|
#epigenetics
#differentiation
#chromatin
#transcriptomics
#enhancer
|
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0
|
|
Iron plaques as terminal electron acceptors optimize clostridial fermentation and nitrogen fixation in rice rhizospheres.
(academic.oup.com)
|
Zhan J
…
Zhou S
The ISME Journal
2026-01-14
|
#nitrogen fixation
#metagenomics
#metabolism
#transcriptomics
#microbiome
|
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0
|
|
Metabolite interactions mediate beneficial alliances between Bacillus and Trichoderma for effective Fusarium wilt control.
(academic.oup.com)
|
Xie J
…
Shen Q
The ISME Journal
2026-01-14
|
#transcriptomics
#biofilm
#metabolism
#antagonism
#microbiome
|
|
0
|
|
Rice gs3 allele and low-nitrogen conditions enrich rhizosphere microbiota that mitigate methane emissions and promote beneficial crop traits.
(academic.oup.com)
|
Kwon Y
…
Ryu CM
The ISME Journal
2026-01-14
|
#metagenomics
#microbiome
#metabolism
#transcriptomics
#nitrogen fixation
|
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0
|
|
Iron limitation promotes metabolic cross-feeding between cheese ripening bacteria.
(academic.oup.com)
|
Mekuli R
…
Herve V
The ISME Journal
2026-01-14
|
#metabolism
#metabolomics
#transcriptomics
#microbiome
#quorum sensing
|
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0
|
|
Temperature-dependent photostasis and nitrogen limitation in streamlined-genome red algae Cyanidiophyceae from natural habitats.
(academic.oup.com)
|
Tsujino D
…
Miyagishima SY
The ISME Journal
2026-01-14
|
#photosynthesis
#transcriptomics
#proteomics
#metabolism
#extremophile
|
|
0
|
|
Microoxic conditions promote Escherichia-associated cellulase expression in the giant panda gut.
(academic.oup.com)
|
Deng F
…
Li Y
The ISME Journal
2026-01-14
|
#metagenomics
#microbiome
#transcriptomics
#cellulase
#culturomics
|
|
0
|
|
Candidatus Dermatophostum as a novel genus of polyphosphate-accumulating organisms for high-strength wastewater treatment.
(academic.oup.com)
|
Wang H
…
Ju F
The ISME Journal
2026-01-14
|
#metagenomics
#wastewater
#phosphorus
#metabolism
#transcriptomics
|
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0
|
|
Growth promotion of milk-associated Candida zeylanoides by a cyclic lipopeptide produced by Pseudomonas.
(academic.oup.com)
|
Wasmuth I
…
Stallforth P
The ISME Journal
2026-01-14
|
#microbiome
#metabolism
#transcriptomics
#bacteriocin
#fermentation
|
|
0
|
|
Cross-niche metabolite-microbiome interactions orchestrate systemic soybean resistance to Fusarium root rot.
(academic.oup.com)
|
Liu Q
…
Lian T
The ISME Journal
2026-01-14
|
#microbiome
#metabolism
#immunity
#transcriptomics
#disease
|
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0
|
|
Rhizosphere microbial shifts drive amygdalin detoxification and jasmonate-mediated alleviation of peach autotoxicity.
(academic.oup.com)
|
Yang J
…
Liu J
The ISME Journal
2026-01-14
|
#microbiome
#rhizosphere
#metabolism
#transcriptomics
#detoxification
|
|
0
|
|
Light restores sporulation in Rhizopus microsporus cured of its endosymbionts, unveiling their role in fitness and virulence.
(academic.oup.com)
|
Ahmiane Y
…
Sanchis M
The ISME Journal
2026-01-14
|
#endosymbiosis
#transcriptomics
#virulence
#sporulation
#mucormycosis
|
|
0
|
|
Hypoosmolarity inhibits ammonia oxidation by terrestrial and freshwater Nitrosopumilaceae members.
(academic.oup.com)
|
Gwak JH
…
Rhee SK
The ISME Journal
2026-01-14
|
#nitrification
#ammonia oxidation
#microbiome
#transcriptomics
#osmoregulation
|
|
0
|
|
Biocontrol potential and molecular basis of predation in a marine raptorial ciliate.
(academic.oup.com)
|
Pan J
…
Long H
The ISME Journal
2026-01-14
|
#predation
#biocontrol
#transcriptomics
#genomics
#aquaculture
|
|
0
|
|
Lactuchelins represent lipopeptide siderophores produced by Pseudomonas lactucae that inhibit Xanthomonas campestris.
(academic.oup.com)
|
Chesneau G
…
Barret M
The ISME Journal
2026-01-14
|
#siderophore
#microbiome
#antagonism
#transcriptomics
#metabolomics
|
|
0
|
|
Nonlinear transcriptional responses to gradual modulation of transcription factor dosage.
(elifesciences.org)
|
Domingo J
…
Lappalainen T
eLife
2026-01-14
|
#transcriptomics
#crispr
#gene dosage
#transcription factor
#single-cell sequencing
|
|
0
|
|
Polystyrene-degrading bacteria modulate host stress and toxicity responses to microplastic exposure in Caenorhabditis elegans.
(academic.oup.com)
|
Kang MG
…
Kim Y
The ISME Journal
2026-01-14
|
#microplastic
#biofilm
#microbiome
#transcriptomics
#toxicity
|
|
0
|
|
Comprehensive profiling of chromatin occupancy dynamics through the cell cycle.
(academic.oup.com)
|
Li Y
…
Hartemink AJ
Nucleic Acids Research
2026-01-14
|
#chromatin
#transcriptomics
#sequencing
#cell cycle
|
|
0
|
|
RprR is a plant-responsive regulator of exopolysaccharide production, biofilm formation, and virulence in Ralstonia pseudosolanacearum.
(journals.asm.org)
|
O'Banion BS
…
Allen C
mBio
2026-01-14
|
#virulence
#biofilm
#pathogenesis
#transcriptomics
#quorum sensing
|
|
0
|
|
Mapping the transcriptional regulatory network of a fungal pathogen by exploiting transcription factor perturbation.
(journals.asm.org)
|
Abid D
…
Brent MR
mBio
2026-01-14
|
#gene regulation
#transcriptomics
#pathogenesis
#fungal infection
#virulence
|
|
0
|
|
An EGR1-dependent cascade modulates genome architecture at the CSF1R locus.
(academic.oup.com)
|
Deliard S
…
Gardini A
Nucleic Acids Research
2026-01-14
|
#chromatin
#transcriptomics
#differentiation
#macrophage
#enhancer
|
|
0
|
|
Interpretable trajectory inference with single-cell linear adaptive negative-binomial expression (scLANE) testing.
(academic.oup.com)
|
Leary JR
…
Bacher R
Nucleic Acids Research
2026-01-14
|
#transcriptomics
#trajectory inference
#single-cell
#statistical testing
|
|
0
|
|
Symptomatic SARS-CoV-2 breakthrough infections broaden the repertoire of Spike-reactive CD4 T cells.
(journals.asm.org)
|
Johansson E
…
Sette A
mBio
2026-01-14
|
#immunity
#transcriptomics
#infection
#vaccination
|
|
0
|
|
HIV-1 transcription dominates over host gene activity at the HIV-1 integration site.
(journals.asm.org)
|
Weissman S
…
Ho Y-C
mBio
2026-01-14
|
#transcriptomics
#hiv
#crispr
#chromatin
#integration
|
|
0
|
|
The long noncoding RNA VIM-AS1 and nucleoporin Nup358/RanBP2 regulate SMAD nuclear accumulation during TGF-beta signaling.
(academic.oup.com)
|
Rodrigues-Junior DM
…
Moustakas A
Nucleic Acids Research
2026-01-14
|
#signaling
#cancer
#transcriptomics
#inflammation
|
|
0
|
|
Carbon monoxide-driven proton respiration enables facultative anaerobes to survive electron acceptor limitation.
(academic.oup.com)
|
Katayama YA
…
Yoshida T
The ISME Journal
2026-01-14
|
#metabolism
#anaerobic
#respiration
#genomics
#transcriptomics
|
|
0
|
|
AHL-mediated quorum sensing drives plastisphere formation and elevates pathogenic potential.
(academic.oup.com)
|
Wang J
…
Wang X
The ISME Journal
2026-01-14
|
#quorum sensing
#biofilm
#metagenomics
#virulence
#transcriptomics
|