|
0
|
|
A survey of contrastive learning methods in molecular representation.
(academic.oup.com)
|
Forooghi A
…
Ngom A
Briefings in Bioinformatics
2026-01-07
|
#deep learning
#contrastive learning
#cheminformatics
#representation
|
|
0
|
|
DL-GapFilling: a novel deep learning framework for improved plant genome gap filling.
(academic.oup.com)
|
Chen Y
…
Wang G
Briefings in Bioinformatics
2026-01-07
|
#assembly
#sequencing
#genome
#deep learning
|
|
0
|
|
A two-stage GAN-based instrumental variable method for causal analysis of omics data.
(academic.oup.com)
|
Zhou Y
…
Lu Q
Briefings in Bioinformatics
2026-01-07
|
#gene expression
#deep learning
#mendelian randomization
#causal inference
#omics
|
|
0
|
|
GATCL: graph attention network meets contrastive learning for spatial domain identification.
(academic.oup.com)
|
Mu J
…
Zhao T
Briefings in Bioinformatics
2026-01-07
|
#deep learning
#multi-omics
#clustering
#spatial omics
|
|
0
|
|
Global and local integrated gradient-based diffusion model for de novo drug design.
(academic.oup.com)
|
Park S
…
Lee H
Briefings in Bioinformatics
2026-01-07
|
#deep learning
#diffusion
#drug design
#molecular docking
|
|
0
|
|
Systematic evaluation of computational methods for cell segmentation.
(academic.oup.com)
|
Yang R
…
Zhou W
Briefings in Bioinformatics
2026-01-07
|
#microscopy
#deep learning
#multimodal
#segmentation
#image analysis
|
|
0
|
|
Task-specific pre-training for molecular property prediction.
(academic.oup.com)
|
Zhang W
…
Liu X
Briefings in Bioinformatics
2026-01-07
|
#prediction
#deep learning
#drug discovery
#molecular
|
|
0
|
|
iDLDDG: predicting protein stability changes from missense mutations in DNA-binding proteins using integrated deep learning features.
(academic.oup.com)
|
Yu X
…
Deng Z
Briefings in Bioinformatics
2026-01-07
|
#dna-binding
#computational modeling
#deep learning
#protein stability
#mutation_prediction
|
|
0
|
|
Towards accurate artificial intelligence models for strain-level phage-host prediction.
(academic.oup.com)
|
Malajczuk CJ
…
Karpievitch YV
Briefings in Bioinformatics
2026-01-07
|
#genomics
#machine learning
#deep learning
#phage
#phage-host
|
|
0
|
|
CoBRA: compound binding site prediction using RNA language model.
(academic.oup.com)
|
Jang W
…
Shin WH
Briefings in Bioinformatics
2026-01-07
|
#rna
#deep learning
#binding
#drug discovery
#language model
|
|
0
|
|
CSRefiner: a lightweight framework for fine-tuning cell segmentation models with small datasets.
(academic.oup.com)
|
Shi C
…
Zhang Y
Briefings in Bioinformatics
2026-01-07
|
#deep learning
#segmentation
#spatial omics
#cell imaging
|
|
0
|
|
Detection of alternative splicing: deep sequencing or deep learning?
(academic.oup.com)
|
Hackl LM
…
Tsoy O
Briefings in Bioinformatics
2026-01-07
|
#transcriptomics
#splicing
#sequencing
#prediction
#deep learning
|
|
0
|
|
EPINTLM: enhancer-promoter prediction with pretrained k-mer embeddings and residual cross-attention.
(academic.oup.com)
|
Nguyen TL
…
Quoc Khanh Le N
Briefings in Bioinformatics
2026-01-07
|
#prediction
#deep learning
#gene regulation
#sequence modeling
|
|
0
|
|
Transformer-based graphs for drug-drug interaction with chemical knowledge embedding.
(academic.oup.com)
|
Zhang J
…
Fan X
Briefings in Bioinformatics
2026-01-07
|
#deep learning
#drug-drug interaction
#cheminformatics
#interpretability
#graph neural network
|
|
0
|
|
ChemEmbed: a deep learning framework for metabolite identification using enhanced MS/MS data and multidimensional molecular embeddings.
(academic.oup.com)
|
Faizan-Khan M
…
Yanes O
Briefings in Bioinformatics
2026-01-07
|
#metabolomics
#mass spectrometry
#machine learning
#deep learning
#annotation
|
|
0
|
|
DeepRMSF: a deep learning-based automated approach for predicting atomic-level flexibility in RNA structure.
(academic.oup.com)
|
Feng C
…
Han R
Briefings in Bioinformatics
2026-01-07
|
#modeling
#deep learning
#simulation
#rna structure
#protein flexibility
|
|
0
|
|
Artificial intelligence-powered prediction of diabetic complications: from clinical data to molecular omics.
(academic.oup.com)
|
Xie X
…
Lin H
Briefings in Bioinformatics
2026-01-07
|
#diabetes
#prediction
#machine learning
#deep learning
#omics
|
|
0
|
|
ANIA: an inception-attention network for predicting minimum inhibitory concentration of antimicrobial peptides.
(academic.oup.com)
|
Chiu YP
…
Lee TY
Briefings in Bioinformatics
2026-01-07
|
#modeling
#amr
#deep learning
#antimicrobial peptides
|
|
0
|
|
Dynamic-GLEP: a dynamics-informed deep learning framework for ligand efficacy prediction in representative Class A GPCRs.
(academic.oup.com)
|
Chen Z
…
Teng D
Briefings in Bioinformatics
2026-01-07
|
#modeling
#deep learning
#binding
#drug discovery
#simulation
|
|
0
|
|
MHAFR-DDI: a multimodal hierarchical attention fusion and relation-aware architecture for drug-drug interaction event prediction.
(academic.oup.com)
|
Li M
…
Wang Y
Briefings in Bioinformatics
2026-01-07
|
#prediction
#deep learning
#pharmacology
#drug-drug interaction
#molecular modeling
|