|
0
|
|
The European Nucleotide Archive in 2025.
(academic.oup.com)
|
David Y
…
Ugis S
Nucleic Acids Research
2026-01-06
|
#sequencing
#database
#metagenomics
#biodiversity
|
|
0
|
|
PRIME: a database for 16S rRNA microbiome data with phenotypic reference and comprehensive metadata.
(academic.oup.com)
|
Zhang Z
…
Wang T
Nucleic Acids Research
2026-01-06
|
#microbiome
#sequencing
#database
#metagenomics
#taxonomy
|
|
0
|
|
The IPD-IMGT/HLA database: recent developments in sequence submission.
(academic.oup.com)
|
Barker DJ
…
Robinson J
Nucleic Acids Research
2026-01-06
|
#hla
#database
#sequencing
#polymorphism
#immunogenetics
|
|
0
|
|
PolyA_DB v4: systematic polyA site identification and isoform annotation in human and mouse genomes using 3' end and long-read sequencing data.
(academic.oup.com)
|
Yu S
…
Tian B
Nucleic Acids Research
2026-01-06
|
#polyadenylation
#transcriptomics
#isoform
#sequencing
#annotation
|
|
0
|
|
JoGo 1.0: the ACTG hierarchical nomenclature and database covering 4.7 million haplotypes across 19,194 human genes.
(academic.oup.com)
|
Nagasaki M
…
Kawai Y
Nucleic Acids Research
2026-01-06
|
#haplotype
#sequencing
#genomics
#variation
#database
|
|
0
|
|
ASTRA: a comprehensive resource of stress-induced transcriptional activity in human cell lines.
(academic.oup.com)
|
Tsifintaris M
…
Giannakakis A
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#stress
#database
#rna
#sequencing
|
|
0
|
|
SILVA in 2026: a global core biodata resource for rRNA within the DSMZ digital diversity.
(academic.oup.com)
|
Chuvochina M
…
Reimer LC
Nucleic Acids Research
2026-01-06
|
#taxonomy
#database
#microbiome
#sequencing
#rna
|
|
0
|
|
AMRnet: a data visualization platform to interactively explore pathogen variants and antimicrobial resistance.
(academic.oup.com)
|
Cerdeira LT
…
Holt KE
Nucleic Acids Research
2026-01-06
|
#amr
#sequencing
#surveillance
#visualization
#genomics
|
|
0
|
|
EVmiRNA2.0: an updated database for miRNA expression in comprehensive human extracellular vesicles.
(academic.oup.com)
|
Xie GY
…
Lei Q
Nucleic Acids Research
2026-01-06
|
#microrna
#extracellular vesicles
#sequencing
#database
|
|
0
|
|
ZOVER 2.0: a virome-based platform for zoonotic and vector-borne viruses.
(academic.oup.com)
|
Liu B
…
Wu Z
Nucleic Acids Research
2026-01-06
|
#metagenomics
#virome
#surveillance
#sequencing
#zoonosis
|
|
0
|
|
DDBJ update in 2025: system integration for global data-sharing including pathogen surveillance.
(academic.oup.com)
|
Ara T
…
Arita M
Nucleic Acids Research
2026-01-06
|
#sequencing
#pathogen
#surveillance
#genomics
#metadata
|
|
0
|
|
CIRCpedia v3: an interactive database for circular RNA characterization and functional exploration.
(academic.oup.com)
|
Zhai SN
…
Yang L
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#annotation
#database
#rna
#sequencing
|
|
0
|
|
The mouse Gene Expression Database (GXD): 2026 update.
(academic.oup.com)
|
Smith CM
…
Ringwald M
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#database
#sequencing
|
|
0
|
|
EMBL's European Bioinformatics Institute (EMBL-EBI) in 2025.
(academic.oup.com)
|
Thakur M
…
McEntyre J
Nucleic Acids Research
2026-01-06
|
#bioinformatics
#sequencing
#database
|
|
0
|
|
HLRMDB: a comprehensive database of the human microbiome with metagenomic assembly, taxonomic classification, and functional annotation by analysis of long-read and hybrid sequencing data.
(academic.oup.com)
|
Zhai Z
…
Pan J
Nucleic Acids Research
2026-01-06
|
#metagenomics
#assembly
#microbiome
#sequencing
#amr
|
|
0
|
|
Global phylogeography and genomic characterization of blaNDM-1-positive carbapenem-resistant Acinetobacter soli.
(academic.oup.com)
|
Min P
…
Liu H
Journal of Antimicrobial Chemotherapy
2026-01-06
|
#amr
#phylogeography
#plasmid
#conjugation
#sequencing
|
|
0
|
|
Heterogeneity of genetic sequence within quasi-species of influenza virus revealed by single-molecule sequencing.
(elifesciences.org)
|
Tamao K
…
Tabata K
eLife
2026-01-06
|
#sequencing
#viral evolution
#quasi-species
#influenza
#mutation
|
|
0
|
|
HIV-1 drug resistance among pregnant and breastfeeding mothers and its association with paediatric HIV infections in the Dolutegravir era in Uganda.
(academic.oup.com)
|
Kapaata A
…
Kikaire B
Journal of Antimicrobial Chemotherapy
2026-01-06
|
#amr
#sequencing
#vertical transmission
#phylogenomics
#hiv
|
|
0
|
|
Preclinical evaluation of epetraborole in the hollow fibre system model of Mycobacterium abscessus lung disease.
(academic.oup.com)
|
Singh S
…
Srivastava S
Journal of Antimicrobial Chemotherapy
2026-01-06
|
#amr
#modeling
#infection
#sequencing
#tb
|
|
0
|
|
National representative survey of pretreatment HIV drug resistance in Colombia: analysis of antiretroviral resistance-associated mutations using next-generation sequencing.
(academic.oup.com)
|
Martinez-Buitrago E
…
Avila-Rios S
Journal of Antimicrobial Chemotherapy
2026-01-06
|
#amr
#sequencing
#infection
#transmitted resistance
|
|
0
|
|
In vitro selection of cefiderocol-resistant mutants in Acinetobacter baumannii harbouring the most common carbapenemase genes.
(academic.oup.com)
|
Raro OHF
…
Nordmann P
Journal of Antimicrobial Chemotherapy
2026-01-06
|
#amr
#sequencing
#mutation
|
|
0
|
|
ViMIC 2.0: an updated database of human disease-related viral mutations, integration sites, and multi-omics data.
(academic.oup.com)
|
Huang C
…
Wang Y
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#virology
#sequencing
#mutation
#integration
|
|
0
|
|
Gene4Denovo2: an updated platform for human de novo mutations discovery and interpretation.
(academic.oup.com)
|
Zhu Z
…
Li J
Nucleic Acids Research
2026-01-06
|
#variant calling
#mutation
#sequencing
#annotation
#pathogenesis
|
|
0
|
|
FAVOR 2.0: A reengineered functional annotation of variants online resource for interpreting genomic variation.
(academic.oup.com)
|
Zhou H
…
Lin X
Nucleic Acids Research
2026-01-06
|
#annotation
#sequencing
#variant
#genomics
|
|
0
|
|
RNAPaceDB: a dedicated database to dissect RNA velocity across diverse cell types.
(academic.oup.com)
|
Liu H
…
Wang S
Nucleic Acids Research
2026-01-06
|
#transcriptomics
#single-cell
#sequencing
#database
#gene expression
|
|
0
|
|
GTDB release 10: a complete and systematic taxonomy for 715 230 bacterial and 17 245 archaeal genomes.
(academic.oup.com)
|
Parks DH
…
Hugenholtz P
Nucleic Acids Research
2026-01-06
|
#taxonomy
#phylogenomics
#microbiome
#sequencing
|
|
0
|
|
SeekPCMdb: knowledge on disease-associated protein-coding mutations.
(academic.oup.com)
|
Yang P
…
Jia P
Nucleic Acids Research
2026-01-06
|
#mutation
#database
#sequencing
#curation
|
|
0
|
|
TCRdb 2.0: an updated T-cell receptor sequence database.
(academic.oup.com)
|
Yue T
…
Guo AY
Nucleic Acids Research
2026-01-06
|
#sequencing
#immunity
#repertoire
#immunotherapy
|
|
0
|
|
RMPore: a comprehensive database of single-molecule RNA modifications detected by Nanopore direct RNA sequencing.
(academic.oup.com)
|
Lin Z
…
Hu K
Nucleic Acids Research
2026-01-06
|
#rna modification
#sequencing
#transcriptomics
#database
|
|
0
|
|
Genome Variation Map: a platform for the analysis and integration of genomic variation.
(academic.oup.com)
|
Bai X
…
Song S
Nucleic Acids Research
2026-01-06
|
#genetics
#genomic variation
#sequencing
#database
#annotation
|
|
0
|
|
m6AConquer: a consistently quantified and orthogonally validated database for the N6-methyladenosine (m6A) epitranscriptome.
(academic.oup.com)
|
Zhao X
…
Wei Z
Nucleic Acids Research
2026-01-06
|
#epigenomics
#sequencing
#methylation
#database
#qtl
|
|
0
|
|
Dosa: A method to covalently barcode proteins for high-throughput biochemistry.
(pnas.org)
|
Ashok Y
…
Fields S
PNAS
2026-01-06
|
#protein design
#mutagenesis
#sequencing
#high-throughput
|
|
0
|
|
TTDB: a comprehensive Transcriptome Turnover Database for exploring mRNA stability.
(academic.oup.com)
|
Jiang H
…
Xie Z
Nucleic Acids Research
2026-01-06
|
#rna
#transcriptomics
#database
#stability
#sequencing
|
|
0
|
|
Deep-learning prediction of gene expression from personal genomes.
(link.springer.com)
|
Drusinsky S
…
Pollard KS
Genome Biology
2026-01-06
|
#modeling
#transcriptomics
#sequencing
#genome
|
|
0
|
|
The current landscape of adaptive immune receptor genomic and repertoire data: OGRDB and VDJbase.
(academic.oup.com)
|
Lees WD
…
Yaari G
Nucleic Acids Research
2026-01-06
|
#immunology
#sequencing
#repertoire
#germline
#antibody
|
|
0
|
|
SomaMutDB 2.0: A comprehensive database for exploring somatic mutations and their functional impact in normal human tissues.
(academic.oup.com)
|
Shea A
…
Dong X
Nucleic Acids Research
2026-01-06
|
#database
#somatic_mutations
#sequencing
#annotation
#aging
|
|
0
|
|
VirJenDB: a FAIR (meta)data and bioinformatics platform for all viruses.
(academic.oup.com)
|
Saghaei S
…
Cassman NA
Nucleic Acids Research
2026-01-06
|
#metagenomics
#sequencing
#virology
#taxonomy
#curation
|
|
0
|
|
Notable transmitted HIV drug resistance among people who inject drugs in Pakistan.
(academic.oup.com)
|
Melnychuk S
…
Cholette F
Journal of Antimicrobial Chemotherapy
2026-01-06
|
#amr
#hiv
#sequencing
#genotyping
#infection
|
|
0
|
|
Preventing resistance development in infections by OXA beta-lactamase-producing Pseudomonas aeruginosa: correlating clinical outcomes with hollow-fibre model input.
(academic.oup.com)
|
Montero MM
…
Oliver A
Journal of Antimicrobial Chemotherapy
2026-01-06
|
#amr
#modeling
#sequencing
#infection
#pharmacodynamics
|
|
0
|
|
Detection of primary cancer types via fragment size selection in circulating cell-free extrachromosomal circular DNA.
(link.springer.com)
|
Fang J
…
Qu K
Genome Medicine
2026-01-06
|
#cancer
#circulating
#sequencing
#classification
#biomarker
|
|
0
|
|
In vitro susceptibility of cefepime-enmetazobactam, cefepime-taniborbactam and cefepime-zidebactam towards carbapenemase-producing Enterobacterales.
(academic.oup.com)
|
Dutkiewicz M
…
Emeraud C
Journal of Antimicrobial Chemotherapy
2026-01-06
|
#amr
#susceptibility
#sequencing
|