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0
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scSuperAnnotator: a platform for benchmarking comparison and visualizing automated cellular annotation methods for scRNA-seq data.
(academic.oup.com)
|
Qi Q
…
Li X
Nucleic Acids Research
2026-01-05
|
#transcriptomics
#clustering
#sequencing
#annotation
|
|
0
|
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HLTF cooperates with GATA1 to activate transcriptional programs and chromatin remodeling during erythroid development.
(academic.oup.com)
|
Gong H
…
Liu J
Nucleic Acids Research
2026-01-05
|
#transcriptomics
#chromatin
#differentiation
#hematopoiesis
#transcription
|
|
0
|
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CellMap: precision mapping of cellular landscape in spatial transcriptomics.
(academic.oup.com)
|
Liu H
Nucleic Acids Research
2026-01-05
|
#transcriptomics
#single-cell
#clustering
#integration
|
|
0
|
|
Uncovering coordinated pathway interactions through gene co-differential expression in yeast.
(academic.oup.com)
|
Nasar MI
…
Alam MT
Nucleic Acids Research
2026-01-05
|
#co-expression
#metabolism
#clustering
#transcriptomics
|
|
0
|
|
SCALE: unsupervised multiscale domain identification in spatial omics data.
(academic.oup.com)
|
Yousefi B
…
Bonn S
Nucleic Acids Research
2026-01-05
|
#transcriptomics
#clustering
#tissue
|
|
0
|
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A unified computational framework for quantitative design and optimization of transcriptional regulation across bacterial species.
(academic.oup.com)
|
Wang T
…
Chen Y
Nucleic Acids Research
2026-01-05
|
#synthetic biology
#transcriptomics
#modeling
#genetic circuits
#optimization
|
|
0
|
|
A network-based model of Aspergillus fumigatus elucidates regulators of development and defensive natural products of an opportunistic pathogen.
(academic.oup.com)
|
Carriel CC
…
Roy S
Nucleic Acids Research
2026-01-05
|
#transcriptomics
#modeling
#virulence
#metabolism
#pathogenicity
|
|
0
|
|
A conserved 3'UTR short motif regulates gene expression in vertebrates.
(academic.oup.com)
|
Eufrasio A
…
Moreira A
Nucleic Acids Research
2026-01-05
|
#regulation
#transcriptomics
#polyadenylation
#cancer
|
|
0
|
|
Microenvironment-aware spatial modeling for accurate inference of cell identity.
(academic.oup.com)
|
Liu Q
…
Shyr Y
Nucleic Acids Research
2026-01-05
|
#transcriptomics
#clustering
#modeling
|
|
0
|
|
Integration of high-throughput proteomic data and complementary omics layers with PriOmics.
(genome.cshlp.org)
|
Kosch R
…
Altenbuchinger M
Genome Research
2026-01-05
|
#proteomics
#modeling
#post-translational-modifications
#integration
#transcriptomics
|
|
0
|
|
Multi-omics reveals cholesterol-driven macrophage metabolic reprogramming and inflammation in chronic obstructive pulmonary disease.
(link.springer.com)
|
Ran X
…
Guo F
Genome Medicine
2026-01-05
|
#metabolomics
#inflammation
#copd
#macrophage
#transcriptomics
|
|
0
|
|
Mapping isoforms and regulatory mechanisms from spatial transcriptomics data with SPLISOSM.
(nature.com)
|
Su J
…
Rabadan R
Nature Biotechnology
2026-01-05
|
#transcriptomics
#splicing
#isoforms
#modeling
|
|
0
|
|
Revealing a coherent cell-state landscape across single-cell datasets with CONCORD.
(nature.com)
|
Zhu Q
…
Gartner ZJ
Nature Biotechnology
2026-01-05
|
#single-cell
#integration
#transcriptomics
#dimensionality reduction
#clustering
|
|
0
|
|
Dynamic metabolic and molecular changes during seasonal shrinking in Sorex araneus.
(genome.cshlp.org)
|
Thomas WR
…
Davalos LM
Genome Research
2026-01-05
|
#metabolism
#proteomics
#transcriptomics
#seasonality
#aging
|
|
0
|
|
No evidence for the putative nitric oxide sensor NsrR as a key regulator of magnetosome formation in Magnetospirillum gryphiswaldense.
(academic.oup.com)
|
Woller A
…
Schuler D
Nucleic Acids Research
2026-01-05
|
#magnetosome
#transcriptomics
#gene regulation
#denitrification
|
|
0
|
|
The nuclear cap-binding complex regulates subcellular RNA processing and surveillance of coding and noncoding RNAs.
(academic.oup.com)
|
Ganguly DR
…
Gregory BD
Nucleic Acids Research
2026-01-05
|
#ncrna
#transcriptomics
#rna processing
#degradome
#surveillance
|
|
0
|
|
Accurate detection of somatic single-nucleotide variants from bulk RNA-seq data using RNA-MosaicHunter.
(academic.oup.com)
|
Huang AY
…
Lee EA
Nucleic Acids Research
2026-01-05
|
#sequencing
#variant detection
#transcriptomics
#aging
#neurodegeneration
|
|
0
|
|
STAN, a computational framework for inferring spatially informed transcription factor activity.
(academic.oup.com)
|
Zhang L
…
Osmanbeyoglu HU
Nucleic Acids Research
2026-01-05
|
#transcriptomics
#modeling
#cancer
|
|
0
|
|
Co-transcriptional splicing changes combine with reduced productive transcription initiation for cold-induced repression of FLC.
(academic.oup.com)
|
Maple R
…
Dean C
Nucleic Acids Research
2026-01-05
|
#epigenetics
#transcriptomics
#splicing
#modeling
#flowering
|
|
0
|
|
Cell-type- and chromosome-specific chromatin landscapes and DNA replication programs of Drosophila testis tumor stem cell-like cells.
(genome.cshlp.org)
|
Urban JA
…
Chen X
Genome Research
2026-01-05
|
#chromatin
#transcriptomics
#epigenetics
#replication
#stem cell
|
|
0
|
|
Recovering gene regulatory networks in single-cell multi-omics data with PRISM-GRN.
(genome.cshlp.org)
|
Zhang W
…
Wang Y
Genome Research
2026-01-05
|
#transcriptomics
#modeling
#single-cell
#chromatin
|