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0
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Accurate chromatin marks peak calling with Omnipeak.
(academic.oup.com)
|
Shpynov O
…
Artyomov MN
Nucleic Acids Research
2026-01-05
|
#modeling
#chromatin
#transcription
#sequencing
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0
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A unified computational framework for quantitative design and optimization of transcriptional regulation across bacterial species.
(academic.oup.com)
|
Wang T
…
Chen Y
Nucleic Acids Research
2026-01-05
|
#modeling
#transcriptomics
#synthetic biology
#optimization
#genetic circuits
|
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0
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A network-based model of Aspergillus fumigatus elucidates regulators of development and defensive natural products of an opportunistic pathogen.
(academic.oup.com)
|
Carriel CC
…
Roy S
Nucleic Acids Research
2026-01-05
|
#modeling
#metabolism
#virulence
#transcriptomics
#pathogenicity
|
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0
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Microenvironment-aware spatial modeling for accurate inference of cell identity.
(academic.oup.com)
|
Liu Q
…
Shyr Y
Nucleic Acids Research
2026-01-05
|
#modeling
#transcriptomics
#clustering
|
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0
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Integration of high-throughput proteomic data and complementary omics layers with PriOmics.
(genome.cshlp.org)
|
Kosch R
…
Altenbuchinger M
Genome Research
2026-01-05
|
#modeling
#proteomics
#transcriptomics
#integration
#post-translational-modifications
|
|
0
|
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Design of bacterial DNT sensors based on computational models.
(academic.oup.com)
|
Bahiri Elitzur S
…
Tuller T
Nucleic Acids Research
2026-01-05
|
#modeling
#biosensor
#plasmid
#promoter
|
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0
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Mapping isoforms and regulatory mechanisms from spatial transcriptomics data with SPLISOSM.
(nature.com)
|
Su J
…
Rabadan R
Nature Biotechnology
2026-01-05
|
#modeling
#transcriptomics
#splicing
#isoforms
|
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0
|
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Predicted protein 3D structures provide essential insights into the genetic architecture underlying phenotypic diversity in maize.
(genome.cshlp.org)
|
Wang S
…
Song B
Genome Research
2026-01-05
|
#modeling
#proteomics
#phylogenomics
#pangenome
|
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0
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A universal kinetic framework for quantitative isothermal amplification governed by polymerase speed, amplicon size, and binding efficiency.
(academic.oup.com)
|
Tang L
…
Yang K
Nucleic Acids Research
2026-01-05
|
#modeling
#amplification
#kinetics
#quantification
|
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0
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A structure-guided approach to noncoding variant evaluation for transcription factor binding using AlphaFold 3.
(academic.oup.com)
|
Gerasimavicius L
…
Marsh JA
Nucleic Acids Research
2026-01-05
|
#modeling
#transcription
#prediction
#protein
#variant
|
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0
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STAN, a computational framework for inferring spatially informed transcription factor activity.
(academic.oup.com)
|
Zhang L
…
Osmanbeyoglu HU
Nucleic Acids Research
2026-01-05
|
#modeling
#transcriptomics
#cancer
|
|
0
|
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Co-transcriptional splicing changes combine with reduced productive transcription initiation for cold-induced repression of FLC.
(academic.oup.com)
|
Maple R
…
Dean C
Nucleic Acids Research
2026-01-05
|
#modeling
#transcriptomics
#splicing
#epigenetics
#flowering
|
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0
|
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Recovering gene regulatory networks in single-cell multi-omics data with PRISM-GRN.
(genome.cshlp.org)
|
Zhang W
…
Wang Y
Genome Research
2026-01-05
|
#modeling
#transcriptomics
#chromatin
#single-cell
|