|
0
|
|
Spider: a flexible and unified framework for simulating spatial transcriptomics data.
(academic.oup.com)
|
Yang J
…
Zheng X
Bioinformatics
2026-01-02
|
#transcriptomics
#benchmarking
#simulation
#spatial omics
|
|
0
|
|
isoSeQL: comparing long-read isoforms across multiple datasets.
(academic.oup.com)
|
Liu CS
…
Chun J
Bioinformatics
2026-01-02
|
#transcriptomics
#sequencing
#clustering
#isoforms
|
|
0
|
|
OmicsQ: a user-friendly platform for interactive quantitative omics data analysis.
(academic.oup.com)
|
Trinh XT
…
Schwammle V
Bioinformatics
2026-01-02
|
#metabolomics
#proteomics
#transcriptomics
#clustering
|
|
0
|
|
STAHD: a scalable and accurate method to detect spatial domains in high-resolution spatial transcriptomics data.
(academic.oup.com)
|
Du Z
…
Zheng X
Bioinformatics
2026-01-02
|
#transcriptomics
#clustering
#microenvironment
#graph
|
|
0
|
|
Joint representation learning for oncology applications.
(academic.oup.com)
|
Nandan T
…
Bruningk SC
Bioinformatics
2026-01-02
|
#modeling
#transcriptomics
#cancer
#epigenomics
#integration
|
|
0
|
|
scSurv: a deep generative model for single-cell survival analysis.
(academic.oup.com)
|
Mizukoshi C
…
Shimamura T
Bioinformatics
2026-01-02
|
#modeling
#transcriptomics
#cancer
#heterogeneity
|
|
0
|
|
SpatialRNA: a Python package for easy application of Graph Neural Network models on single-molecule spatial transcriptomics dataset.
(academic.oup.com)
|
Lyu R
…
McCarthy DJ
Bioinformatics
2026-01-02
|
#modeling
#transcriptomics
#clustering
|
|
0
|
|
Assessing differential cell composition in single-cell studies using voomCLR.
(academic.oup.com)
|
Takele Assefa A
…
Van den Berge K
Bioinformatics
2026-01-02
|
#modeling
#transcriptomics
#clustering
#compositionality
|
|
0
|
|
Analyzing cell-type-specific isoform expression using IsoDiffR and long-read single-cell RNA sequencing.
(academic.oup.com)
|
Chen H
…
Shi ZX
Bioinformatics
2026-01-02
|
#transcriptomics
#gene expression
#sequencing
#single-cell
#isoforms
|
|
0
|
|
CD48 is a novel immune checkpoint on tumour-associated macrophages in hepatocellular carcinoma.
(gut.bmj.com)
|
Shi G
…
Li M
Gut
2026-01-02
|
#transcriptomics
#immunotherapy
#macrophage
#hepatocellular carcinoma
#immune checkpoint
|
|
0
|
|
Global atlas of enhancer-promoter interactome in cotton genome revealed by profiling RNA-RNA spatial interactions.
(link.springer.com)
|
Wen M
…
Wang K
Genome Biology
2026-01-02
|
#transcriptomics
#sequencing
#gene regulation
#polyploidy
|
|
0
|
|
Profiler: an open web platform for multi-omics analysis.
(academic.oup.com)
|
Zirem Y
…
Salzet M
Bioinformatics
2026-01-02
|
#proteomics
#transcriptomics
#machine learning
#pathway
#biomarker
|
|
0
|
|
ImmunoPepper: extracting personalized peptides from complex splicing graphs.
(academic.oup.com)
|
Prelot L
…
Ratsch G
Bioinformatics
2026-01-02
|
#transcriptomics
#cancer
#splicing
#immunotherapy
#peptide
|
|
0
|
|
OTMODE: an optimal transport theory-based framework for identifying differential features in single-cell multi-omics data.
(academic.oup.com)
|
Su H
…
Yang W
Bioinformatics
2026-01-02
|
#modeling
#proteomics
#transcriptomics
#clustering
|
|
0
|
|
Unravelling the progression of the zebrafish primary body axis with reconstructed spatiotemporal transcriptomics.
(link.springer.com)
|
Dong Y
…
Xu PF
Genome Biology
2026-01-02
|
#transcriptomics
#embryogenesis
#gene expression
#spatiotemporal
#developmental
|
|
0
|
|
Capturing gene-cell duality in a cat's cradle.
(academic.oup.com)
|
Laddach A
…
Shapiro M
Bioinformatics
2026-01-02
|
#transcriptomics
#single-cell
#clustering
|
|
0
|
|
CellCraft: an extensible visual programming application for gene regulatory network inference.
(academic.oup.com)
|
Shin D
…
Lee D
Bioinformatics
2026-01-02
|
#transcriptomics
#single-cell
#networks
#inference
|