This site is new - feedback and suggestions welcome via GitHub issues.

#metagenomics — Wednesday, January 14, 2026 (47 items)

0 ℹ Illuminating the functional dark matter of the gut microbiome. (linkinghub.elsevier.com) robot Zhang H … Liao C Cell Host & Microbe 2026-01-14 #microbiome #proteomics #metabolism #metagenomics #phage
0 ℹ Time-specific bidirectional links between the maternal microbiome, milk composition, and infant gut microbiota. (linkinghub.elsevier.com) robot Deng L … Dailey-Chwalibog T Cell Host & Microbe 2026-01-14 #microbiome #metabolism #metagenomics #dysbiosis #colonization
0 ℹ Comparative mitogenomics of kingdom Fungi - evolutionary insights and metagenomic applications. (academic.oup.com) robot Ahrendt SR … Mondo SJ Nucleic Acids Research 2026-01-14 #metagenomics #phylogenomics #evolution #annotation #mitogenomics
0 ℹ Taxonomic filtering accompanies functional expansion during long-term soil restoration. (academic.oup.com) robot Goodall T … Pywell R The ISME Journal 2026-01-14 #microbiome #metabolism #metagenomics #restoration #soil
0 ℹ Global terrestrial distribution of N2O-reducing Acidobacteriota members. (academic.oup.com) robot Mise K … Itoh H The ISME Journal 2026-01-14 #microbiome #genomics #metabolism #metagenomics
0 ℹ Aesculetin-mediated recruitment of denitrifying microbiota by resistant rapeseed suppresses Plasmodiophora brassicae via nitrate depletion. (academic.oup.com) robot Zhang Z … Chen T The ISME Journal 2026-01-14 #microbiome #infection #metabolism #immunity #metagenomics
0 ℹ Co-occurrence is associated with horizontal gene transfer across marine bacteria independent of phylogeny. (academic.oup.com) robot Douglas GM … Chaffron S The ISME Journal 2026-01-14 #microbiome #metagenomics #phylogenomics #horizontal transfer
0 ℹ Iron plaques as terminal electron acceptors optimize clostridial fermentation and nitrogen fixation in rice rhizospheres. (academic.oup.com) robot Zhan J … Zhou S The ISME Journal 2026-01-14 #microbiome #metabolism #metagenomics #transcriptomics #nitrogen fixation
0 ℹ Microbial succession and assembly shaped by sulfur, spatial partitioning, and water flow in a volcanic acidic river of northern Patagonia. (academic.oup.com) robot Juan DR … Raquel Q The ISME Journal 2026-01-14 #metagenomics #biofilm #colonization #succession #acidic
0 ℹ Diverse Cyanopeptides follow distinct temporal succession patterns in freshwater harmful algal blooms. (academic.oup.com) robot Hart LN … Dick GJ The ISME Journal 2026-01-14 #metabolomics #metagenomics #biosynthesis #toxin #cyanobacteria
0 ℹ Microbial synthesis structures organic compound composition in anaerobic digestion. (academic.oup.com) robot Yang X … Deng Y The ISME Journal 2026-01-14 #microbiome #metabolomics #metabolism #metagenomics #biogas
0 ℹ Rice gs3 allele and low-nitrogen conditions enrich rhizosphere microbiota that mitigate methane emissions and promote beneficial crop traits. (academic.oup.com) robot Kwon Y … Ryu CM The ISME Journal 2026-01-14 #microbiome #metabolism #metagenomics #transcriptomics #nitrogen fixation
0 ℹ Chemosynthesis enables microbial communities to flourish in a marine cave ecosystem. (academic.oup.com) robot Ricci F … Greening C The ISME Journal 2026-01-14 #microbiome #metabolism #metagenomics #biogeochemistry #chemosynthesis
0 ℹ Predicting microbial community responses to disturbance using genome-resolved trait-based life-history strategies. (academic.oup.com) robot Santillan E … Wuertz S The ISME Journal 2026-01-14 #microbiome #ecology #modeling #metabolism #metagenomics
0 ℹ Metabolic potential structures gill symbiont communities in two common shipworm species. (academic.oup.com) robot Flatau R … Distel DL The ISME Journal 2026-01-14 #microbiome #metabolism #metagenomics #symbiosis
0 ℹ Seasonality drives temporal niche partitioning of pelagic prokaryotes. (academic.oup.com) robot Li F … DeLong EF The ISME Journal 2026-01-14 #microbiome #ecology #metabolism #metagenomics #seasonality
0 ℹ Elevated temperature simulating heatwaves restructures active nitrifying communities and associated viruses in tidal flats and agricultural soils. (academic.oup.com) robot Wang B … Qin W The ISME Journal 2026-01-14 #metagenomics #virus #climate change #nitrification #stable-isotope probing
0 ℹ Single-cell assembled genomes predict enhanced bacterial metabolic cross-feeding potential in carbon-enriched soils. (academic.oup.com) robot Guo H … Shen Q The ISME Journal 2026-01-14 #microbiome #modeling #metabolism #metagenomics #sequencing
0 ℹ Cefiderocol resistance genes identified in environmental samples using functional metagenomics. (academic.oup.com) robot Gschwind R … Ruppe E The ISME Journal 2026-01-14 #amr #metagenomics #functional #environmental
0 ℹ Unique microbial communities and phylosymbiosis signals in herpetofauna. (academic.oup.com) robot Li J … Chen T The ISME Journal 2026-01-14 #microbiome #metagenomics #symbiosis #phylosymbiosis
0 ℹ Strain-level diversity of giant viruses infecting chlorarachniophyte algae in the subtropical North Pacific. (academic.oup.com) robot Schon ME … Fischer MG The ISME Journal 2026-01-14 #microbiome #genomics #metagenomics #phylogenomics #virus
0 ℹ Microoxic conditions promote Escherichia-associated cellulase expression in the giant panda gut. (academic.oup.com) robot Deng F … Li Y The ISME Journal 2026-01-14 #microbiome #metagenomics #transcriptomics #culturomics #cellulase
0 ℹ Candidatus Dermatophostum as a novel genus of polyphosphate-accumulating organisms for high-strength wastewater treatment. (academic.oup.com) robot Wang H … Ju F The ISME Journal 2026-01-14 #metabolism #metagenomics #transcriptomics #wastewater #phosphorus
0 ℹ Systems-level restoration of vaginal and gut microbiota by Lactobacillus helveticus 20838 alleviates Gardnerella vaginalis-induced dysbiosis. (academic.oup.com) robot Kim J … Jung ES The ISME Journal 2026-01-14 #microbiome #metagenomics #dysbiosis #inflammation #probiotic
0 ℹ Prokaryotic assemblages recovered by sedimentary DNA record natural and human-driven disturbances over the past 13 500 years in a cultural landscape. (academic.oup.com) robot Wang Y … Epp LS The ISME Journal 2026-01-14 #microbiome #metagenomics #paleoecology #sediment #anthropogenic
0 ℹ Phylum-wide propionate degradation and its potential connection to poly-gamma-glutamate biosynthesis in Candidatus Cloacimonadota phylum. (academic.oup.com) robot Calusinska M … Goux X The ISME Journal 2026-01-14 #metabolism #metagenomics #metatranscriptomics #syntrophy #anaerobic digestion
0 ℹ Organohalide respiration by a Desulforhopalus-dominated community. (academic.oup.com) robot Zhang C … Smidt H The ISME Journal 2026-01-14 #microbiome #metabolism #metagenomics #dehalogenation #anaerobic
0 ℹ Advancing microbial ecology, microbiomes, and One Health in Africa: from regional initiatives to pan-African flagship programs. (academic.oup.com) robot Hijri M … Ahmed B The ISME Journal 2026-01-14 #microbiome #metagenomics #microbial ecology #pangenome #one health
0 ℹ A novel synbiotic (SCM06) for anxiety and sensory hyperresponsiveness in children with autism spectrum disorder: an open-label pilot study. (nature.com) robot Wong OWH … Ng SC npj Biofilms and Microbiomes 2026-01-14 #microbiome #metagenomics #anxiety #autism #synbiotic
0 ℹ Captive breeding of specialty animals represents an overlooked yet critical reservoir for spreading antibiotic resistance genes. (academic.oup.com) robot Xi J … Qian X The ISME Journal 2026-01-14 #microbiome #amr #metagenomics #zoonosis
0 ℹ Host-linked virome assembly and turnover predict bacterial community structure in wastewater treatment systems. (academic.oup.com) robot Yu J … Lee PKH The ISME Journal 2026-01-14 #microbiome #modeling #metagenomics #coevolution #virome
0 ℹ Functional complementarity between vitamin B1 and B12 metabolisms shapes seasonal marine microbial communities. (academic.oup.com) robot Beauvais M … Galand PE The ISME Journal 2026-01-14 #microbiome #metabolism #metagenomics #seasonality #bioavailability
0 ℹ Warming mitigates root exudate-induced priming effects via changes to microbial biomass, community structure, and gene abundance. (academic.oup.com) robot Chari NR … Taylor BN The ISME Journal 2026-01-14 #microbiome #metabolism #metagenomics #sequencing #soil
0 ℹ Phylogenetic assembly of methanogenesis regulates methane yield in food-waste anaerobic digestion. (academic.oup.com) robot Zhao B … Deng Y The ISME Journal 2026-01-14 #microbiome #metabolism #metagenomics #phylogenomics #anaerobic digestion
0 ℹ Redox gradients define the ecological niche of ciliates with denitrifying endosymbionts in anoxic lake waters. (academic.oup.com) robot Zeller LM … Milucka J The ISME Journal 2026-01-14 #microbiome #metagenomics #endosymbiosis #denitrification #anaerobic
0 ℹ Macroecological processes impact Australian soil resistomes and climatically stable regions with anthropogenic activities serve as ARG hotspots. (academic.oup.com) robot Du M … McBratney A The ISME Journal 2026-01-14 #microbiome #modeling #amr #metabolism #metagenomics
0 ℹ Sulfoquinovose degradation by cow rumen microbiota. (academic.oup.com) robot Krasenbrink J … Loy A The ISME Journal 2026-01-14 #microbiome #metabolism #metagenomics #metatranscriptomics #sulfur cycling
0 ℹ DNA virus-host patterns in lake and marine environments over the last glacial cycle. (academic.oup.com) robot Boeckel C … Herzschuh U The ISME Journal 2026-01-14 #microbiome #ecology #metagenomics #paleogenomics #virus
0 ℹ Bioplastic biodegradability shapes microbial communities in a coastal brackish environment. (academic.oup.com) robot Pessi IS … Kaartokallio H The ISME Journal 2026-01-14 #microbiome #metabolism #metagenomics #biodegradation #metatranscriptomics
0 ℹ Hidden reservoir of highly adaptable multi-host plasmids that propagate antibiotic genes in healthy human populations. (academic.oup.com) robot Han N … Zhang W The ISME Journal 2026-01-14 #microbiome #amr #metagenomics #plasmid #conjugation
0 ℹ Active methylotrophic methanogenesis by a microbial consortium enriched from a terrestrial meteorite impact crater. (journals.asm.org) robot van Dam F … Drake H mBio 2026-01-14 #metabolism #metagenomics #methanogenesis #metatranscriptomics #consortium
0 ℹ Dietary niches drive microbial community assembly, network reorganization, and symbiont evolution in freshwater fish gut microbiomes. (academic.oup.com) robot Shen H … Zhao S The ISME Journal 2026-01-14 #microbiome #metabolism #metagenomics #symbiosis #comparative genomics
0 ℹ Bile acid metabolism dysregulation following Helicobacter pylori eradication promotes plasmid-mediated antimicrobial resistance in the gut microbiome. (academic.oup.com) robot Zhang P … Guo J The ISME Journal 2026-01-14 #microbiome #amr #metagenomics #plasmid #conjugation
0 ℹ Symbiont diversity within Loripes orbiculatus and the case for multiple hosts. (academic.oup.com) robot Vogel MA … Petersen JM The ISME Journal 2026-01-14 #microbiome #metagenomics #sequencing #symbiosis
0 ℹ Persistent antimicrobial resistance during soil remediation driven by residual heavy metal co-selection. (academic.oup.com) robot Xue R … Cui L The ISME Journal 2026-01-14 #amr #metagenomics #dysbiosis #remediation
0 ℹ AHL-mediated quorum sensing drives plastisphere formation and elevates pathogenic potential. (academic.oup.com) robot Wang J … Wang X The ISME Journal 2026-01-14 #virulence #metagenomics #transcriptomics #biofilm #quorum sensing
0 ℹ Contrasting salinity regimes reshape microbe-DOM coupling and reduce recalcitrant dissolved organic carbon preservation in a salt lake. (academic.oup.com) robot Wang X … Xie S The ISME Journal 2026-01-14 #microbiome #metabolism #metagenomics #salinity