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0
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The European Nucleotide Archive in 2025.
(academic.oup.com)
|
David Y
…
Ugis S
Nucleic Acids Research
2026-01-06
|
#biodiversity
#metagenomics
#sequencing
#database
|
|
0
|
|
BV-BRC: a unified bacterial and viral bioinformatics resource with expanded functionality and AI integration.
(academic.oup.com)
|
Shukla M
…
Stevens RL
Nucleic Acids Research
2026-01-06
|
#genomics
#metagenomics
#transcriptomics
#assembly
#annotation
|
|
0
|
|
ResMicroDb: a comprehensive database and analysis platform for the human respiratory microbiome.
(academic.oup.com)
|
Ji X
…
Li M
Nucleic Acids Research
2026-01-06
|
#microbiome
#metagenomics
#database
#taxonomy
|
|
0
|
|
Metalog: curated and harmonised contextual data for global metagenomics samples.
(academic.oup.com)
|
Kuhn M
…
Bork P
Nucleic Acids Research
2026-01-06
|
#microbiome
#metagenomics
#database
#taxonomy
#metadata
|
|
0
|
|
Ocean-M: an integrated global-scale multi-omics database for marine microbial diversity, function and ecological interactions.
(academic.oup.com)
|
Lv J
…
Wang S
Nucleic Acids Research
2026-01-06
|
#microbiome
#amr
#metabolism
#metagenomics
#assembly
|
|
0
|
|
PRIME: a database for 16S rRNA microbiome data with phenotypic reference and comprehensive metadata.
(academic.oup.com)
|
Zhang Z
…
Wang T
Nucleic Acids Research
2026-01-06
|
#microbiome
#metagenomics
#sequencing
#database
#taxonomy
|
|
0
|
|
VirJenDB: a FAIR (meta)data and bioinformatics platform for all viruses.
(academic.oup.com)
|
Saghaei S
…
Cassman NA
Nucleic Acids Research
2026-01-06
|
#metagenomics
#sequencing
#curation
#virology
#taxonomy
|
|
0
|
|
MicrobialScope: an integrated genomic resource with rich annotations across bacteria, archaea, fungi, and viruses.
(academic.oup.com)
|
Feng X
…
Li SC
Nucleic Acids Research
2026-01-06
|
#genomics
#metagenomics
#database
#annotation
|
|
0
|
|
ZOVER 2.0: a virome-based platform for zoonotic and vector-borne viruses.
(academic.oup.com)
|
Liu B
…
Wu Z
Nucleic Acids Research
2026-01-06
|
#metagenomics
#sequencing
#surveillance
#virome
#zoonosis
|
|
0
|
|
Meta-virus resource (MetaVR): expanding the frontiers of viral diversity with 24 million uncultivated virus genomes.
(academic.oup.com)
|
Fiamenghi MB
…
Kyrpides NC
Nucleic Acids Research
2026-01-06
|
#metagenomics
#virology
#database
#taxonomy
|
|
0
|
|
Host-microbiome mutualism drives urea carbon salvage and acetogenesis during hibernation.
(pnas.org)
|
Regan MD
…
Carey HV
PNAS
2026-01-06
|
#microbiome
#metabolism
#metagenomics
#mutualism
#acetogenesis
|
|
0
|
|
HLRMDB: a comprehensive database of the human microbiome with metagenomic assembly, taxonomic classification, and functional annotation by analysis of long-read and hybrid sequencing data.
(academic.oup.com)
|
Zhai Z
…
Pan J
Nucleic Acids Research
2026-01-06
|
#microbiome
#amr
#metagenomics
#assembly
#sequencing
|
|
0
|
|
gcMeta 2025: a global repository of metagenome-assembled genomes enabling cross-ecosystem microbial discovery and function research.
(academic.oup.com)
|
Sun Y
…
Wu L
Nucleic Acids Research
2026-01-06
|
#microbiome
#metabolism
#metagenomics
#assembly
#taxonomy
|
|
0
|
|
Predicting probiotic success: lessons from Oxalobacter and oxalate metabolism.
(nature.com)
|
Suryavanshi M
…
Miller AW
npj Biofilms and Microbiomes
2026-01-06
|
#microbiome
#metabolism
#metagenomics
#probiotic
#hyperoxaluria
|
|
0
|
|
Immunoglobulin A protease from Sutterella wadsworthensis modifies outcome of infection with Campylobacter jejuni and is associated with microbiome diversity.
(tandfonline.com)
|
Majzoub ME
…
Kaakoush NO
Gut Microbes
2026-01-06
|
#microbiome
#infection
#immunity
#metagenomics
#phylogenomics
|
|
0
|
|
VIRE: a metagenome-derived, planetary-scale virome resource with environmental context.
(academic.oup.com)
|
Nishijima S
…
Bork P
Nucleic Acids Research
2026-01-06
|
#ecology
#metagenomics
#assembly
#virome
#taxonomy
|
|
0
|
|
dbCAN-HGM: CAZyme gene clusters in gut microbiomes of diverse human populations.
(academic.oup.com)
|
Yan Y
…
Yin Y
Nucleic Acids Research
2026-01-06
|
#microbiome
#metabolism
#metagenomics
#dysbiosis
#assembly
|
|
0
|
|
metaTraits: a large-scale integration of microbial phenotypic trait information.
(academic.oup.com)
|
Podlesny D
…
Bork P
Nucleic Acids Research
2026-01-06
|
#microbiome
#genomics
#metagenomics
#database
#phenotypic
|
|
0
|
|
MicroAgroBiome: a toolkit for exploring specialized metabolism and ecological interactions in rhizosphere microbiomes of cultivated crops.
(academic.oup.com)
|
Aguilar C
…
Selem-Mojica N
Nucleic Acids Research
2026-01-06
|
#microbiome
#metabolism
#metagenomics
#rhizosphere
#agriculture
|
|
0
|
|
proGenomes4: providing 2 million accurately and consistently annotated high-quality prokaryotic genomes.
(academic.oup.com)
|
Fullam A
…
Mende DR
Nucleic Acids Research
2026-01-06
|
#metagenomics
#pangenome
#database
#annotation
#prokaryotic
|
|
0
|
|
metagRoot: a comprehensive database of protein families associated with plant root microbiomes.
(academic.oup.com)
|
Chasapi MN
…
Pavlopoulos GA
Nucleic Acids Research
2026-01-06
|
#microbiome
#proteomics
#metagenomics
#database
#metatranscriptomics
|
|
0
|
|
DOO: integrated multi-omics resources for deep ocean organisms.
(academic.oup.com)
|
She J
…
Wu L
Nucleic Acids Research
2026-01-06
|
#genomics
#metagenomics
#phylogenomics
#transcriptomics
#database
|
|
0
|
|
GMrepo v3: a curated human gut microbiome database with expanded disease coverage and enhanced cross-dataset biomarker analysis.
(academic.oup.com)
|
Liu C
…
Chen WH
Nucleic Acids Research
2026-01-06
|
#microbiome
#metagenomics
#dysbiosis
#biomarker
#database
|