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0
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Semantic design of functional de novo genes from a genomic language model.
(nature.com)
|
Merchant AT
…
Hie BL
Nature
2026-01-01
|
#modeling
#design
#language model
#synthetic biology
#protein design
|
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0
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Microbiome Damkohler number predicts lotic microbial community succession in river networks.
(academic.oup.com)
|
Crump BC
…
Bambakidis T
ISME Communications
2026-01-01
|
#microbiome
#community assembly
#phylogenomics
#modeling
#ecology
|
|
0
|
|
Bayesian inference captures metabolite-bacteria interactions in a microbial community.
(academic.oup.com)
|
Jansma J
…
Hui C
ISME Communications
2026-01-01
|
#modeling
#microbiome
#metabolism
#inference
#dysbiosis
|
|
0
|
|
Deciphering microbial interactions using a label-free microbead sorting approach.
(academic.oup.com)
|
Govindaraju SB
…
van Tatenhove-Pel RJ
ISME Communications
2026-01-01
|
#microbiome
#consortia
#culturing
#high-throughput
#modeling
|
|
0
|
|
Carbon-monoxide-driven bioethanol production operates through a tungsten-dependent catalyst.
(nature.com)
|
Lemaire ON
…
Wagner T
Nature Chemical Biology
2026-01-01
|
#metabolism
#biofuel
#enzyme
#ferredoxin
#modeling
|
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0
|
|
Carbon source acts as a deterministic filter shaping microbial succession and rare-abundant decoupling in soil bacterial communities.
(academic.oup.com)
|
Stari L
…
Nagata Y
ISME Communications
2026-01-01
|
#sequencing
#microbiome
#succession
#metabolism
#modeling
|
|
0
|
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Revealing community dynamics in polymicrobial infections through a quantitative framework.
(academic.oup.com)
|
Adekoya AE
…
Ibberson CB
ISME Communications
2026-01-01
|
#microbiome
#modeling
#infection
#metabolism
#biofilm
|
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0
|
|
Bridging taxonomic gaps in microbial community profiling with LSTM-generated synthetic full-length 16S rRNA sequences.
(academic.oup.com)
|
Geijo-Fernandez J
…
Garcia-Perez CA
ISME Communications
2026-01-01
|
#metagenomics
#sequencing
#microbiome
#clustering
#modeling
|
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0
|
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Host traits and environmental factors shape infection heterogeneity in wild rat-protozoa networks.
(academic.oup.com)
|
Markfeld M
…
Pilosof S
ISME Communications
2026-01-01
|
#microbiome
#parasitism
#infection
#modeling
#ecology
|
|
0
|
|
Assessment of computational methods in predicting TCR-epitope binding recognition.
(nature.com)
|
Lu Y
…
Suo S
Nature Methods
2026-01-01
|
#immunology
#binding
#prediction
#modeling
#epitope
|
|
0
|
|
Land-use change undermines the stability of avian functional diversity.
(nature.com)
|
Weeks TL
…
Tobias JA
Nature
2026-01-01
|
#biodiversity
#ecosystem
#resilience
#extinction
#modeling
|
|
0
|
|
Dependency-competition tradeoffs structure microbial niches and nitrogen cycling.
(academic.oup.com)
|
Xu L
…
Zakem EJ
ISME Communications
2026-01-01
|
#metabolism
#nitrogen cycling
#denitrification
#modeling
#microbiome
|
|
0
|
|
ImmunoMatch learns and predicts cognate pairing of heavy and light immunoglobulin chains.
(nature.com)
|
Guo D
…
Ng JCF
Nature Methods
2026-01-01
|
#immunity
#modeling
#sequencing
|
|
0
|
|
Substrate toxicity drives successive range expansions opposing spatial intermixing in cross-feeding consortia.
(academic.oup.com)
|
Chen X
…
Wu XL
ISME Communications
2026-01-01
|
#cross-feeding
#biofilm
#metabolism
#modeling
#toxicity
|
|
0
|
|
Surface optimization governs the local design of physical networks.
(nature.com)
|
Meng X
…
Barabasi AL
Nature
2026-01-01
|
#modeling
#optimization
#network
|
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0
|
|
MultiSuSiE improves multi-ancestry fine-mapping in All of Us whole-genome sequencing data.
(nature.com)
|
Rossen J
…
Price AL
Nature Genetics
2026-01-01
|
#fine mapping
#sequencing
#ancestry
#modeling
#genome-wide association
|
|
0
|
|
Latent space-based network analysis for brain-behavior linking in neuroimaging.
(nature.com)
|
Wang S
…
Zhao Y
Nature Methods
2026-01-01
|
#neuroimaging
#modeling
#biomarker
|
|
0
|
|
Direct and indirect neurogenesis from radial glial progenitor cell clones in the mouse neocortex.
(link.springer.com)
|
Shen D
…
Yu YC
The EMBO Journal
2026-01-01
|
#neurogenesis
#modeling
#lineage
#progenitor
|
|
0
|
|
Towards model-informed precision dosing of intravenous linezolid: a multicentre external evaluation of pharmacokinetic models in critically ill adults.
(linkinghub.elsevier.com)
|
Starp J
…
Liebchen U
Clinical Microbiology and Infection
2026-01-01
|
#pharmacokinetics
#modeling
#amr
#infection
|
|
0
|
|
Unveiling the role of soil microorganisms in indicating paddy soil health via metagenomics combined with machine learning.
(academic.oup.com)
|
Zheng YL
…
Zhu YG
ISME Communications
2026-01-01
|
#metagenomics
#microbiome
#modeling
#metabolism
#biogeochemistry
|
|
0
|
|
Atmospheric microplastic emissions from land and ocean.
(nature.com)
|
Evangelou I
…
Stohl A
Nature
2026-01-01
|
#modeling
#pollution
#atmospheric
|
|
0
|
|
Climate change shifts the North Pacific storm track polewards.
(nature.com)
|
Chemke R
…
Yuval J
Nature
2026-01-01
|
#climate
#modeling
#atmospheric
|
|
0
|
|
Architecture of the neutrophil compartment.
(nature.com)
|
Cerezo-Wallis D
…
Ballesteros I
Nature
2026-01-01
|
#transcriptomics
#immunity
#inflammation
#modeling
|
|
0
|
|
Models and co-culture experiments assess four mechanisms of phytoplankton-bacteria interactions.
(nature.com)
|
Weissberg O
…
Sher D
Nature Microbiology
2026-01-01
|
#modeling
#coculture
#metabolism
#microbiome
#symbiosis
|
|
0
|
|
Quantifying host-microbe interactions with bacterial lineage tracing.
(science.org)
|
Campbell IW
…
Waldor MK
Science
2026-01-01
|
#infection
#colonization
#evolution
#modeling
#pathogen
|
|
0
|
|
Limit of atomic-resolution-tomography reconstruction of amorphous nanoparticles.
(nature.com)
|
Busch R
…
Zuo JM
Nature
2026-01-01
|
#tomography
#nanoparticles
#imaging
#modeling
|
|
0
|
|
Large-scale dynamos driven by shear-flow-induced jets.
(nature.com)
|
Tripathi B
…
Fan R
Nature
2026-01-01
|
#dynamo
#turbulence
#magnetohydrodynamics
#modeling
|
|
0
|
|
An integrated view of the structure and function of the human 4D nucleome.
(nature.com)
|
Dekker J
…
Yue F
Nature
2026-01-01
|
#chromatin
#genome organization
#3d structure
#transcriptomics
#modeling
|
|
0
|
|
Squidiff: predicting cellular development and responses to perturbations using a diffusion model.
(nature.com)
|
He S
…
Leong KW
Nature Methods
2026-01-01
|
#transcriptomics
#modeling
#differentiation
#perturbation
#sequencing
|
|
0
|
|
Emerging climate impact on carbon sinks in a consolidated carbon budget.
(nature.com)
|
Friedlingstein P
…
Tian H
Nature
2026-01-01
|
#carbon
#climate
#emissions
#modeling
|
|
0
|
|
Small persistent humid forest clearings drive tropical forest biomass losses.
(nature.com)
|
Xu Y
…
Li W
Nature
2026-01-01
|
#deforestation
#carbon
#forest
#degradation
#modeling
|
|
0
|
|
Potential contribution of microbial interaction to stochasticity of microbiota assembly.
(academic.oup.com)
|
Yu Z
…
Liu Y
ISME Communications
2026-01-01
|
#assembly
#microbiome
#modeling
#phylogenomics
#competition
|
|
0
|
|
A novel method to simultaneously estimate bacterial respiration and growth from oxygen dynamics.
(academic.oup.com)
|
Cakin I
…
Yvon-Durocher G
ISME Communications
2026-01-01
|
#respiration
#metabolism
#modeling
#growth
|
|
0
|
|
Metabolic modeling unveils potential probiotic roles of Flavonifractor plautii in reshaping the Western gut microbiota landscape.
(academic.oup.com)
|
Scott WT Jr
…
Schaap PJ
ISME Communications
2026-01-01
|
#metabolism
#microbiome
#modeling
#probiotic
#transcriptomics
|
|
0
|
|
Ecological drift simulations reveal key factors influencing minimal microbiome engineering and community assembly.
(academic.oup.com)
|
Talavera-Marcos S
…
Aguirre de Carcer D
ISME Communications
2026-01-01
|
#microbiome
#modeling
#community assembly
#consortium
#ecology
|
|
0
|
|
The global macroeconomic burden of diabetes mellitus.
(nature.com)
|
Chen S
…
Bloom DE
Nature Medicine
2026-01-01
|
#diabetes
#economics
#modeling
|
|
0
|
|
Resource competition modeling suggests hydrogen peroxide determines competitive outcomes among oligotrophic cyanobacteria.
(academic.oup.com)
|
McCullough DK
…
Talmy D
ISME Communications
2026-01-01
|
#modeling
#competition
#microbiome
#cyanobacteria
#oxidative stress
|