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0
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Abundance-weighted pathway mapping demonstrates family-level structure of butyrate and propionate production across the human gut microbiome.
(academic.oup.com)
|
Christensen R
…
Cremer J
ISME Communications
2026-01-01
|
#metagenomics
#metabolism
#microbiome
#fermentation
#phylogenomics
|
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0
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|
Environmental quality affects the formation of generalist and specialist taxa in microbial communities.
(academic.oup.com)
|
Yang G
…
Luo X
ISME Communications
2026-01-01
|
#microbiome
#community assembly
#ecology
#metagenomics
#biogeochemistry
|
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0
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Contrasting free-living and particle-associated aerobic anoxygenic phototrophic bacterial communities across space and time in the Alboran Sea.
(academic.oup.com)
|
Santos-Bruna JJ
…
Ferrera I
ISME Communications
2026-01-01
|
#metagenomics
#microbiome
#amplicon
#phylogenomics
#metabolism
|
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0
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Gems From the Caves: Genomic Insights Into the Biosynthetic Potential of Antimicrobial-Producing Bacteria Associated With Tropical Cave-Dwelling Sponges.
(sfamjournals.onlinelibrary.wiley.com)
|
Dias GR
…
Laport MS
Environmental Microbiology
2026-01-01
|
#metagenomics
#amr
#biosynthesis
#microbiome
#comparative genomics
|
|
0
|
|
Long-read metagenomics reveals phage dynamics in the human gut microbiome.
(nature.com)
|
Wirbel J
…
Bhatt AS
Nature
2026-01-01
|
#metagenomics
#microbiome
#sequencing
#phage
#horizontal transfer
|
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0
|
|
Functional gut microbiota dynamics of generalist and specialist bacteria in association with chicken growth.
(academic.oup.com)
|
Marcos S
…
Alberdi A
ISME Communications
2026-01-01
|
#metagenomics
#microbiome
#metabolism
#transcriptomics
#assembly
|
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0
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|
Comparative skin microbiome analyses reveal differences between wild populations and captive groups of the Montseny brook newt (Calotriton arnoldi).
(academic.oup.com)
|
Tulloch S
…
Carranza S
ISME Communications
2026-01-01
|
#microbiome
#metagenomics
#amphibian
#infection
#reintroduction
|
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0
|
|
Cross-Feeding of Carbon and Nitrogen Between Aquificales and Thermus in Hot Springs.
(sfamjournals.onlinelibrary.wiley.com)
|
Keller LM
…
Boyd ES
Environmental Microbiology
2026-01-01
|
#metagenomics
#metabolism
#microbiome
#nitrogen fixation
#symbiosis
|
|
0
|
|
Unveiling the role of soil microorganisms in indicating paddy soil health via metagenomics combined with machine learning.
(academic.oup.com)
|
Zheng YL
…
Zhu YG
ISME Communications
2026-01-01
|
#metagenomics
#microbiome
#modeling
#metabolism
#biogeochemistry
|
|
0
|
|
PacBio full-length 16S rRNA gene sequencing processed with Emu and GTDB provides the highest taxonomic resolution for rumen bacteriome profiling.
(academic.oup.com)
|
Kim H
…
Guan LL
ISME Communications
2026-01-01
|
#metagenomics
#microbiome
#sequencing
#taxonomy
|
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0
|
|
Long-term ecosystem development and retrogression drive microbial specialization for complex organic matter degradation.
(academic.oup.com)
|
Modolon F
…
Wardle DA
ISME Communications
2026-01-01
|
#metagenomics
#degradation
#microbiome
#succession
#soil
|
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0
|
|
Molecular insights into atmospheric methane-oxidizing USCgamma from desert grassland soil based on metagenome-assembled genome analysis.
(academic.oup.com)
|
Wang Y
…
Jia Z
ISME Communications
2026-01-01
|
#metagenomics
#methanotrophy
#microbiome
#phylogenomics
#soil
|
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0
|
|
Host breed and geography shape the antiviral defense landscape of the bovine rumen microbiome.
(academic.oup.com)
|
Faleiros CA
…
Fukumasu H
ISME Communications
2026-01-01
|
#microbiome
#metagenomics
#immunity
#phage
#rumen
|
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0
|
|
Coupling of nutrient bioavailability and nutrient ratios to microbial community structure and functional potential in lakes.
(academic.oup.com)
|
Rulli MPD
…
Berggren M
ISME Communications
2026-01-01
|
#microbiome
#metagenomics
#nutrient cycling
#community assembly
|
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0
|
|
Fermentative nitrite ammonifiers are abundant in soils and ecologically distinct from NrfA-dependent ammonifiers.
(academic.oup.com)
|
Teng Y
…
Saghai A
ISME Communications
2026-01-01
|
#metagenomics
#nitrogen
#soil
#microbiome
#phylogenetics
|
|
0
|
|
Cnidarian-algal partnerships structure bacterial communities during strobilation in Cassiopea xamachana.
(academic.oup.com)
|
Montesanto F
…
Loesgen S
ISME Communications
2026-01-01
|
#symbiosis
#microbiome
#metagenomics
#metamorphosis
|
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0
|
|
Selective shifts in mobile antibiotic resistance genes under carbamazepine exposure in wastewater microbiomes.
(academic.oup.com)
|
Erdem ED
…
Klumper U
ISME Communications
2026-01-01
|
#amr
#microbiome
#metagenomics
#wastewater
#horizontal transfer
|
|
0
|
|
Phosphorus availability mediates pathway-specific nitrogen cycling in stratified peatland microbiomes.
(academic.oup.com)
|
Guo S
…
Mushinski RM
ISME Communications
2026-01-01
|
#metagenomics
#microbiome
#nitrogen
#denitrification
#peatland
|
|
0
|
|
Microbial community shifts in deposits from the 2018 Palu-Donggala tsunami.
(academic.oup.com)
|
Yap W
…
Lauro FM
ISME Communications
2026-01-01
|
#metagenomics
#microbiome
#sediment
#environmental
#disturbance
|
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0
|
|
Cross-habitat interactions drive methylmercury contamination in a disturbed river ecosystem: novel metagenomic and biogeochemical insights.
(academic.oup.com)
|
Storck V
…
Walsh D
ISME Communications
2026-01-01
|
#metagenomics
#biogeochemistry
#microbiome
#contamination
|
|
0
|
|
Large-scale analysis of bacterial genomes reveals thousands of lytic phages.
(nature.com)
|
Perfilyev A
…
Sicheritz-Ponten T
Nature Microbiology
2026-01-01
|
#metagenomics
#phage
#assembly
#genomics
#virulence
|
|
0
|
|
Widespread and intron-rich mirusviruses are predicted to reproduce in nuclei of unicellular eukaryotes.
(nature.com)
|
Medvedeva S
…
Delmont TO
Nature Microbiology
2026-01-01
|
#metagenomics
#virology
#transcriptomics
#evolution
#introns
|
|
0
|
|
Tackling antimicrobial resistance in people who are immunocompromised: leveraging diagnostic and antimicrobial stewardship.
(linkinghub.elsevier.com)
|
Liu C
…
Abbo LM
Lancet Infectious Diseases
2026-01-01
|
#amr
#immunocompromised
#stewardship
#metagenomics
#diagnostics
|
|
0
|
|
Clinical metagenomics for diagnosis and surveillance of viral pathogens.
(nature.com)
|
Torres Montaguth OE
…
Breuer J
Nature Reviews Microbiology
2026-01-01
|
#metagenomics
#sequencing
#surveillance
#diagnosis
#virology
|
|
0
|
|
Ecosystem health shapes viral ecology in peatland soils.
(nature.com)
|
Kosmopoulos JC
…
Anantharaman K
Nature Microbiology
2026-01-01
|
#metagenomics
#microbiome
#virome
#metabolism
#ecology
|
|
0
|
|
The Microflora Danica atlas of Danish environmental microbiomes.
(nature.com)
|
Singleton CM
…
Albertsen M
Nature
2026-01-01
|
#metagenomics
#microbiome
#taxonomy
#metabolism
#sequencing
|
|
0
|
|
Endemic within endemics: the microbiota of the Galapagos marine iguanas.
(academic.oup.com)
|
Grinshpan I
…
Mizrahi I
ISME Communications
2026-01-01
|
#microbiome
#metagenomics
#phylogenomics
#metabolism
#colonization
|
|
0
|
|
A comparison of methods for the optimal recovery of the human fecal virome.
(academic.oup.com)
|
De Chiara L
…
Posada D
ISME Communications
2026-01-01
|
#virome
#metagenomics
#microbiome
#sequencing
#protocol
|
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0
|
|
Overlooked Roles of Pharmaceutical Metabolic Products in Stimulating Microbial Metabolism and Antibiotic Resistance Gene Dissemination of Anaerobic Sludge.
(sfamjournals.onlinelibrary.wiley.com)
|
Wu J
…
Li WW
Environmental Microbiology
2026-01-01
|
#amr
#metagenomics
#plasmid
#metabolism
#microbiome
|
|
0
|
|
Hot life in Antarctica: a novel metabolically versatile Pyrodictiaceae genus thriving at a volcanic-cryosphere-marine interface.
(academic.oup.com)
|
de Araujo Butarelli AC
…
Bendia AG
ISME Communications
2026-01-01
|
#metagenomics
#phylogenomics
#hyperthermophile
#metabolism
#extremophile
|
|
0
|
|
Genomics-based insights into the expanded diversity and adaptation strategies of hadal trench anammox bacteria.
(academic.oup.com)
|
Xiao Y
…
Jing H
ISME Communications
2026-01-01
|
#metagenomics
#anammox
#nitrogen cycle
#adaptation
#metabolism
|
|
0
|
|
Complex compositional and metabolic response of river sediment microbiomes to multiple anthropogenic stressors.
(academic.oup.com)
|
Stach TL
…
Probst AJ
ISME Communications
2026-01-01
|
#metagenomics
#transcriptomics
#microbiome
#metabolism
#resilience
|
|
0
|
|
Unearthing soil biodiversity through collaborative genomic research and education.
(nature.com)
|
Alberts T
…
Zirkle L
Nature Genetics
2026-01-01
|
#metagenomics
#microbiome
#sequencing
#ecology
|
|
0
|
|
Complex viral interactions revealed for the harmful bloom-forming dinoflagellate Karenia brevis.
(academic.oup.com)
|
Booker AE
…
Martinez Martinez J
ISME Communications
2026-01-01
|
#metagenomics
#virology
#harmful algal blooms
#phages
#metabolism
|
|
0
|
|
Dynamics and Eco-Genomics of Baltic Sea Nitrifiers: Seasonality, Niches, Interactions and Genomic Uniqueness.
(sfamjournals.onlinelibrary.wiley.com)
|
Kim SS
…
Needham DM
Environmental Microbiology
2026-01-01
|
#metagenomics
#nitrification
#microbiome
#phylogenomics
#metabolism
|
|
0
|
|
Leached Nitrate Reduces the Abundance of Antibiotic Resistance Genes in Deep Soil Layers up to 10 m.
(sfamjournals.onlinelibrary.wiley.com)
|
Song W
…
Qin S
Environmental Microbiology
2026-01-01
|
#amr
#metagenomics
#microbiome
#soil
#metabolism
|
|
0
|
|
Genome-resolved metagenomics reveals a phylogenetically cohesive Acetilactobacillus-like species complex dominating stingless bee pot honey.
(academic.oup.com)
|
Xolalpa-Aroche A
…
Selem-Mojica N
ISME Communications
2026-01-01
|
#metagenomics
#microbiome
#phylogenomics
#assembly
#taxonomy
|
|
0
|
|
(13)C-labeled single-cell Raman sorting reveals sulfur-driven dark carbon fixation in coastal sediments.
(academic.oup.com)
|
Yue XL
…
Xu XW
ISME Communications
2026-01-01
|
#metagenomics
#chemoautotrophy
#isotope probing
#raman spectroscopy
#metabolism
|
|
0
|
|
Host depletion kits improve microbiome analyses in environmental samples: seagrass as a test case.
(academic.oup.com)
|
Schmelz P
…
Petersen JM
ISME Communications
2026-01-01
|
#metagenomics
#microbiome
#sequencing
#assembly
#amplicon
|
|
0
|
|
Remote Antarctic Island reveals unique algal dynamics in snow and ice.
(academic.oup.com)
|
Broadwell ELM
…
Williamson CJ
ISME Communications
2026-01-01
|
#metagenomics
#microbiome
#phylogenomics
#ecology
|
|
0
|
|
Bipolar investigation of near-surface glacial ice reveals an active microbial ecosystem driven by photosynthesis and chemolithoautotrophy.
(academic.oup.com)
|
O'Connor BRW
…
Whyte LG
ISME Communications
2026-01-01
|
#metagenomics
#metatranscriptomics
#microbiome
#photosynthesis
#chemolithotrophy
|
|
0
|
|
Pollutant biodegradation profile mediated by multi-trophic microbial dynamics in rivers.
(academic.oup.com)
|
Serrana JM
…
Posselt M
ISME Communications
2026-01-01
|
#microbiome
#biodegradation
#metagenomics
#metabolism
#ecology
|
|
0
|
|
Land-use intensification reshapes microbial phosphorus cycling, organic matter composition, and phosphorus fractions in Amazonian soils.
(academic.oup.com)
|
Martins GL
…
Tsai SM
ISME Communications
2026-01-01
|
#metabolism
#metagenomics
#microbiome
#soil
|
|
0
|
|
Illuminating the newly produced viruses within the virosphere with bioorthogonal noncanonical amino acid tagging and single-virus genomic sequencing technologies.
(academic.oup.com)
|
Alvarez-Sanchez M
…
Orphan VJ
ISME Communications
2026-01-01
|
#viromes
#metagenomics
#sequencing
#microbiome
#metabolism
|
|
0
|
|
Comparative functional profiles of microbial communities on drifting microplastics and volcanic pumice.
(academic.oup.com)
|
Zhao S
…
Nakajima R
ISME Communications
2026-01-01
|
#metagenomics
#microplastics
#microbiome
#biofilm
#marine
|
|
0
|
|
Close spatial and metabolic association between heterotrophic and ammonia-oxidizing marine Nitrososphaerota.
(academic.oup.com)
|
Li Q
…
Zhang Y
ISME Communications
2026-01-01
|
#metagenomics
#microbiome
#metatranscriptomics
#ammonia oxidation
#symbiosis
|
|
0
|
|
Porewater microbial community dynamics act as an indicator of northern peatland ecosystem change in response to climate drivers.
(academic.oup.com)
|
Green M
…
Kostka JE
ISME Communications
2026-01-01
|
#metagenomics
#microbiome
#peatland
#methanogenesis
#climate
|
|
0
|
|
Copper availability controls niche differentiation between comammox Nitrospira and ammonia-oxidizing bacteria.
(academic.oup.com)
|
Koike K
…
Matsuura N
ISME Communications
2026-01-01
|
#nitrification
#metagenomics
#microbiome
#copper
#water-treatment
|
|
0
|
|
Genomic evidence for aerotrophy as a defining trait of Ktedonobacteria inhabiting silica-rich oligotrophic caves.
(academic.oup.com)
|
Firrincieli A
…
Cappelletti M
ISME Communications
2026-01-01
|
#autotrophy
#comparative genomics
#metagenomics
#extremophiles
#genomics
|
|
0
|
|
Multi-omics resolved integration reveals microbial niche separation in soil aggregates.
(academic.oup.com)
|
Lin JY
…
Mazza Rodrigues JL
ISME Communications
2026-01-01
|
#metagenomics
#microbiome
#soil
#metabolomics
#niche
|