|
0
|
|
Structural modeling reveals the mechanism of motor ATPase coordination during type IV pilus retraction.
(pnas.org)
|
Teipen AE
…
Dalia AB
PNAS
2026-06-16
|
#simulation
#protein-protein interaction
#modeling
#atpase
|
|
0
|
|
RepliSage: a stochastic graph-based framework for 3D chromatin modeling across the cell cycle.
(academic.oup.com)
|
Korsak S
…
Plewczynski D
Nucleic Acids Research
2026-06-22
|
#modeling
#chromatin
#dna replication
#simulation
#cell cycle
|
|
0
|
|
A cannabidiol-sensitive region involved in the allosteric modulation of the alpha7 nicotinic receptor.
(pnas.org)
|
Chrestia JF
…
Bouzat C
PNAS
2026-06-23
|
#simulation
#allosteric
#cannabidiol
#nicotinic receptor
#mutagenesis
|
|
0
|
|
Introducing non-enzymatic crosslinks into atomistic simulations of collagen fibrils.
(academic.oup.com)
|
Giannetti G
…
Dellago C
Bioinformatics
2026-06-23
|
#simulation
#modeling
#collagen
#crosslinking
#aging
|
|
0
|
|
ModBind(dG): A simulation-based absolute predictor of free energy of binding based on population reweighting.
(pnas.org)
|
Sinko W
…
Kimura SR
PNAS
2026-06-23
|
#modeling
#binding
#docking
#simulation
|
|
0
|
|
DruGUI 2.0: Mapping Protein Druggability with Probe-Based Molecular Dynamics.
(academic.oup.com)
|
Ventura C
…
Bahar I
Bioinformatics
2026-06-24
|
#druggability
#simulation
#drug discovery
#protein structure
#computational
|
|
0
|
|
Wave propagation in fluid-saturated nanoporous media: Upscaling molecular mechanics into continuum-level description.
(pnas.org)
|
Sam A
…
Venegas R
PNAS
2026-06-26
|
#poroelasticity
#nanoporous
#multiscale
#acoustics
#simulation
|
|
0
|
|
Conformational variability of HIV-1 Env trimer and viral vulnerability.
(elifesciences.org)
|
Cao Y
…
Im W
eLife
2026-06-26
|
#hiv
#simulation
#immunity
|
|
0
|
|
PepMCP: A Graph-Based Membrane Contact Probability Predictor for Membrane-Lytic Antimicrobial Peptides.
(academic.oup.com)
|
Dong R
…
Song C
Bioinformatics
2026-06-26
|
#amr
#peptide
#membrane
#prediction
#simulation
|
|
0
|
|
1D domino-like phase transformation enables material programming in 2D MoTe(2).
(pnas.org)
|
Liu X
…
Chen XQ
PNAS
2026-06-29
|
#phase-transformation
#2d materials
#materials
#simulation
#engineering
|
|
0
|
|
Whole-cell particle-based digital twin simulations from 4D lattice light-sheet microscopy data.
(linkinghub.elsevier.com)
|
Arkfeld E
…
Schoneberg J
Cell
2026-06-30
|
#microscopy
#simulation
#mitochondria
#cytoskeleton
#modeling
|
|
0
|
|
seq2ribo: structure-aware integration of machine learning and simulation to predict ribosome location profiles from RNA sequences.
(academic.oup.com)
|
Kaynar G
…
Kingsford C
Bioinformatics
2026-07-01
|
#translation
#ribosome profiling
#machine learning
#rna structure
#simulation
|
|
0
|
|
RAmpSim: a thermodynamic simulator for hybridization capture in metagenomic sequencing.
(academic.oup.com)
|
Zhang A
…
Yu YW
Bioinformatics
2026-07-01
|
#metagenomics
#sequencing
#simulation
#hybridization
|
|
0
|
|
OrgNet+: towards robust protein stability prediction with convolutional neural networks.
(academic.oup.com)
|
Sarycheva A
…
Popov P
Bioinformatics
2026-07-01
|
#protein stability
#deep learning
#mutation_prediction
#simulation
#structure prediction
|
|
0
|
|
Evolution of the ribosomal exit tunnel through the eyes of the nascent chain.
(academic.oup.com)
|
Wlodarski T
Nucleic Acids Research
2026-07-03
|
#translation
#ribosome
#simulation
#evolution
|
|
0
|
|
STGBench: sequencing-level spatial DNA-RNA simulation for multimodal and virtual cell-oriented benchmarking of genomic alterations.
(academic.oup.com)
|
Wang S
…
Wang J
Briefings in Bioinformatics
2026-07-03
|
#sequencing
#transcriptomics
#simulation
#cnv
|
|
0
|
|
Probing anharmonic and heterogeneous carrier dynamics across sublattice melting in a minimal model superionic conductor.
(pnas.org)
|
Niyogi S
…
Kawasaki T
PNAS
2026-07-07
|
#superionic
#transport
#dynamics
#simulation
#melting
|
|
0
|
|
A universal scaling framework for granular asteroid strength and its application to the surface of asteroid Bennu.
(nature.com)
|
Sanchez P
…
Lauretta DS
Nature Communications
2026-07-08
|
#granular
#asteroids
#regolith
#simulation
|
|
0
|
|
Context-aware simulation enables systematic optimization of long-read mapping parameters.
(academic.oup.com)
|
Hu J
…
Yang C
GigaScience
2026-07-08
|
#sequencing
#mapping
#optimization
#simulation
#variants
|
|
0
|
|
Lenacapavir-induced lattice hyperstabilization is central to HIV-1 capsid failure at the nuclear pore complex and in the cytoplasm.
(elifesciences.org)
|
Hudait A
…
Voth GA
eLife
2026-07-08
|
#hiv
#capsid
#antiviral
#simulation
|