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2
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Leviathan: fast, memory-efficient, and scalable taxonomic and pathway profiling for (pan)genome-resolved metagenomics and metatranscriptomics.
(journals.asm.org)
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Espinoza JL
…
Dupont CL
mSystems
2026-10-05
|
#metagenomics
#metatranscriptomics
#microbiome
#taxonomic-profiling
#functional annotation
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8
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LGTM: Gaussian process modulated neural topic modeling for longitudinal microbiome.
(tandfonline.com)
|
Yuan X
…
Vatanen T
Gut Microbes
2026-10-05
|
#microbiome
#metagenomics
#longitudinal
#modeling
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2
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Machine learning and Voronoi-based decision boundaries for Bacterial vaginosis to determine population- specific microbial interactions.
(journals.plos.org)
|
Celeste CG
…
Parker IK
PLOS Computational Biology
2026-10-05
|
#microbiome
#machine learning
#metagenomics
#dysbiosis
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2
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|
Microbial community assembly along a groundwater-hypersaline lake continuum in the Badain Jaran Desert.
(academic.oup.com)
|
Lu M
…
Li M
FEMS Microbiology Ecology
2026-10-05
|
#microbiome
#metagenomics
#assembly
#salinity
#groundwater
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2
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|
Impacts of temperature on hydrogenotrophic denitrifying aquifer microbiota.
(journals.asm.org)
|
Pfaff F
…
Lueders T
Applied and Environmental Microbiology
2026-10-05
|
#denitrification
#microbiome
#groundwater
#metagenomics
#bioremediation
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4
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Microbiota-host genetic interactions modulate MASLD risk in PNPLA3(I148M) carriers via ceramides and are reversible by targeted microbial interventions.
(gut.bmj.com)
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Haque M
…
Trautwein C
Gut
2026-10-05
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#microbiome
#metabolomics
#metagenomics
#steatosis
#dysbiosis
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8
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PanGBank: a large-scale resource of precomputed microbial pangenomes built with PPanGGOLiN.
(academic.oup.com)
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Mainguy J
…
Vallenet D
Nucleic Acids Research
2026-10-05
|
#prokaryotes
#pan-genomics
#database
#comparative genomics
#metagenomics
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2
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|
Soil microbial responses to long-term agricultural practices under no-till: Insights from depth-resolved sampling of shallow soil layers.
(academic.oup.com)
|
Piacenza MS
…
Faggioli VS
FEMS Microbiology Ecology
2026-10-05
|
#microbiome
#agriculture
#soil
#metagenomics
#community
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3
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|
RandomReadsMG: Rapid, realistic metagenome simulation at terabase scale for benchmarking and experimental design.
(linkinghub.elsevier.com)
|
Bushnell B
…
Villada JC
Cell Genomics
2026-10-05
|
#metagenomics
#sequencing
#simulation
#bioinformatics
#benchmarking
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2
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|
Monica Medina.
(linkinghub.elsevier.com)
|
Medina M
Current Biology
2026-10-05
|
#symbiosis
#microbiome
#metagenomics
#evolution
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